ENCFF001RMC

Library Details

Organism: Homo Sapiens
Biosample: temporal lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGD
Description: Part of ENCODE experiment ENCSR000AGD. The libraries contained in this experiment come from human fetal temporal lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 8604.00 10.99 17.61 100.0 SNHG14-207 lncRNA temporal lobe (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 168008.00 88.33 343.87 97.3 SNORD105B-201 snoRNA temporal lobe (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 10309.00 54.75 21.10 80.9 SNORD121B-201 snoRNA temporal lobe (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 2574.00 2.16 5.27 100.0 SNORD127-201 snoRNA temporal lobe (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 106518.00 89.52 218.02 99.15 SNORD127-201 snoRNA temporal lobe (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 22128.00 90.77 45.29 100.0 SNORD42B-201 snoRNA temporal lobe (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 296.00 0.50 0.61 100.0 RNY4P25-201 misc RNA temporal lobe (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 2187.00 62.88 4.48 100.0 SNORD121A-201 snoRNA temporal lobe (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 1552.00 20.96 3.18 69.16 SNORD126-201 snoRNA temporal lobe (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 5219.00 70.49 10.68 86.75 SNORD126-201 snoRNA temporal lobe (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 44307.00 89.93 90.69 95.22 SNORD124-201 snoRNA temporal lobe (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 43.00 1.80 0.09 100.0 SNHG12-201 retained intron temporal lobe (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 10798.00 33.49 22.10 97.05 RPL3-212 retained intron temporal lobe (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 8587.00 26.63 17.58 100.0 RPL3-212 retained intron temporal lobe (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 29616.00 94.76 60.62 100.0 SMC1A-204 retained intron temporal lobe (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 16337.00 77.91 33.44 98.16 RABGGTB-208 protein coding CDS not defined temporal lobe (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1982.00 6.53 4.06 100.0 DDX39B-219 retained intron temporal lobe (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 12902.00 42.49 26.41 78.71 DDX39B-219 retained intron temporal lobe (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 998.00 3.29 2.04 100.0 DDX39B-219 retained intron temporal lobe (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 13306.00 79.42 27.23 100.0 RPS8-206 protein coding CDS not defined temporal lobe (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 101174.00 92.35 207.08 99.35 RPL13-207 retained intron temporal lobe (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 2084.00 1.90 4.27 100.0 RPL13-207 retained intron temporal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 2260.00 0.27 4.63 67.5 EIF4A2-219 retained intron temporal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2687.00 0.32 5.50 52.23 EIF4A2-219 retained intron temporal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 30410.00 3.59 62.24 72.7 EIF4A2-219 retained intron temporal lobe (Tissue)