ENCFF001RMB

Library Details

Organism: Homo Sapiens
Biosample: skeletal muscle tissue (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFZ
Description: Part of ENCODE experiment ENCSR000AFZ. The libraries contained in this experiment come from human fetal skeletal muscle tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 1939.00 1.08 6.26 69.08 RPL13A-212 retained intron skeletal muscle tissue (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 141217.00 78.80 455.79 97.54 RPL13A-212 retained intron skeletal muscle tissue (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 461.00 0.26 1.49 100.0 RPL13A-212 retained intron skeletal muscle tissue (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 3.00 0.00 0.01 100.0 RPL13A-212 retained intron skeletal muscle tissue (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 4794.00 2.68 15.47 85.09 RPL13A-212 retained intron skeletal muscle tissue (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 196.00 0.11 0.63 100.0 RPL13A-212 retained intron skeletal muscle tissue (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 3403.00 1.90 10.98 100.0 RPL13A-212 retained intron skeletal muscle tissue (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 1.00 0.00 0.00 100.0 RPL13A-212 retained intron skeletal muscle tissue (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 36.00 0.69 0.12 100.0 RPL7A-207 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 1071.00 20.40 3.46 100.0 RPL7A-207 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 1614.00 30.75 5.21 79.2 RPL7A-207 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 174.00 2.91 0.56 17.92 RN7SL2-201 misc RNA skeletal muscle tissue (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 96.00 1.61 0.31 100.0 RN7SL2-201 misc RNA skeletal muscle tissue (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 3.00 33.33 0.01 100.0 RGS11-208 retained intron skeletal muscle tissue (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 1276.00 5.94 4.12 80.0 NOP56-217 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 14442.00 67.26 46.61 81.95 NOP56-217 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 408.00 0.40 1.32 39.12 RABGGTB-213 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 613.00 0.60 1.98 100.0 RABGGTB-213 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 842.00 0.83 2.72 100.0 RABGGTB-213 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 635.00 0.62 2.05 60.88 RABGGTB-213 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 53541.00 52.54 172.81 91.15 RABGGTB-213 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 32165.00 31.56 103.81 95.75 RABGGTB-213 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 559.00 0.55 1.80 100.0 RABGGTB-213 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 1.00 0.00 0.00 100.0 RABGGTB-213 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 15710.00 73.71 50.71 100.0 GNL3-211 retained intron skeletal muscle tissue (Tissue)