ENCFF001RMB

Library Details

Organism: Homo Sapiens
Biosample: skeletal muscle tissue (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFZ
Description: Part of ENCODE experiment ENCSR000AFZ. The libraries contained in this experiment come from human fetal skeletal muscle tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 848.00 7.37 2.74 100.0 TMEM107-204 protein coding skeletal muscle tissue (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1893.00 67.61 6.11 92.21 SNHG16-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 522.00 18.64 1.68 100.0 SNHG16-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 226.00 16.31 0.73 100.0 SNHG14-207 lncRNA skeletal muscle tissue (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 45934.00 83.57 148.26 97.12 SNORD105B-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 6176.00 53.80 19.93 70.28 SNORD121B-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 21.00 0.03 0.07 100.0 SNORD127-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 69025.00 95.19 222.78 99.27 SNORD127-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 50648.00 94.40 163.47 100.0 SNORD42B-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 86.00 0.75 0.28 100.0 RNY4P25-201 misc RNA skeletal muscle tissue (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 1548.00 66.47 5.00 100.0 SNORD121A-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 4516.00 77.69 14.58 90.96 SNORD126-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 954.00 16.41 3.08 64.55 SNORD126-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 24091.00 93.38 77.76 97.09 SNORD124-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 18.00 1.68 0.06 100.0 SNHG12-201 retained intron skeletal muscle tissue (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 8911.00 46.60 28.76 100.0 RPL3-212 retained intron skeletal muscle tissue (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 6569.00 34.35 21.20 83.29 RPL3-212 retained intron skeletal muscle tissue (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 27250.00 97.31 87.95 100.0 SMC1A-204 retained intron skeletal muscle tissue (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 26987.00 78.89 87.10 96.79 RABGGTB-208 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 5012.00 40.44 16.18 72.88 DDX39B-219 retained intron skeletal muscle tissue (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 624.00 5.04 2.01 100.0 DDX39B-219 retained intron skeletal muscle tissue (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1262.00 10.18 4.07 100.0 DDX39B-219 retained intron skeletal muscle tissue (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 6715.00 75.26 21.67 100.0 RPS8-206 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 30586.00 92.96 98.72 99.65 RPL13-207 retained intron skeletal muscle tissue (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 614.00 1.87 1.98 100.0 RPL13-207 retained intron skeletal muscle tissue (Tissue)