ENCFF001RMA

Library Details

Organism: Homo Sapiens
Biosample: skin of body (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGA
Description: Part of ENCODE experiment ENCSR000AGA. The libraries contained in this experiment come from human fetal skin tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 123.00 90.44 0.30 100.0 MIR124-1HG-216 lncRNA skin of body (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 379.00 17.09 0.93 100.0 SNHG10-212 lncRNA skin of body (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 49057.83 49.63 120.85 52.28 SNHG19-202 lncRNA skin of body (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 44812.07 45.33 110.39 58.43 SNHG19-202 lncRNA skin of body (Tissue)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 8.39 0.01 0.02 93.24 SNHG19-202 lncRNA skin of body (Tissue)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 0.72 0.00 0.00 72.05 SNHG19-202 lncRNA skin of body (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 8096.00 21.19 19.94 100.0 MIR222HG-206 lncRNA skin of body (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 20206.00 52.90 49.78 79.87 MIR222HG-206 lncRNA skin of body (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 241.00 0.63 0.59 100.0 MIR222HG-206 lncRNA skin of body (Tissue)
ENST00000688371.3 ENST00000688371.3_458_478_+ 458–478 1.00 33.33 0.00 100.0 MIR302CHG-205 lncRNA skin of body (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 20.00 7.75 0.05 100.0 RPSA-216 retained intron skin of body (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 2820.00 1.75 6.95 83.63 MIR99AHG-370 lncRNA skin of body (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 153481.00 95.34 378.10 99.0 MIR99AHG-370 lncRNA skin of body (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 391.00 93.54 0.96 100.0 HPS4-237 retained intron skin of body (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 2679.00 89.75 6.60 100.0 MEG8-253 lncRNA skin of body (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 295.00 6.23 0.73 100.0 MEG9-206 lncRNA skin of body (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 599.00 12.66 1.48 100.0 MEG9-206 lncRNA skin of body (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 1231.00 26.01 3.03 100.0 MEG9-206 lncRNA skin of body (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 279.00 12.46 0.69 100.0 DNAJC5-203 nonsense mediated decay skin of body (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 1900.00 20.67 4.68 100.0 ENST00000707189 TEC skin of body (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 70.00 0.02 0.17 100.0 MIR17HG-214 lncRNA skin of body (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 182021.72 54.01 448.41 59.22 MIR17HG-214 lncRNA skin of body (Tissue)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 72.00 0.02 0.18 100.0 MIR17HG-214 lncRNA skin of body (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 672.00 0.20 1.66 100.0 MIR17HG-214 lncRNA skin of body (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 147304.05 43.71 362.88 47.4 MIR17HG-214 lncRNA skin of body (Tissue)