ENCFF001RLY

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 413.00 18.02 1.18 100.0 SNHG16-201 lncRNA diencephalon (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1633.00 71.25 4.66 93.85 SNHG16-201 lncRNA diencephalon (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 16793.00 18.59 47.91 100.0 SNHG14-207 lncRNA diencephalon (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 103042.00 89.56 293.97 96.85 SNORD105B-201 snoRNA diencephalon (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 2348.00 32.89 6.70 41.59 SNORD121B-201 snoRNA diencephalon (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 83265.00 95.45 237.55 99.26 SNORD127-201 snoRNA diencephalon (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 737.00 0.84 2.10 100.0 SNORD127-201 snoRNA diencephalon (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 10602.00 94.98 30.25 100.0 SNORD42B-201 snoRNA diencephalon (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 130.00 0.29 0.37 100.0 RNY4P25-201 misc RNA diencephalon (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 585.00 74.14 1.67 100.0 SNORD121A-201 snoRNA diencephalon (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 1268.00 17.56 3.62 64.07 SNORD126-201 snoRNA diencephalon (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 5727.00 79.31 16.34 92.33 SNORD126-201 snoRNA diencephalon (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 22887.00 93.32 65.29 96.44 SNORD124-201 snoRNA diencephalon (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 40.00 3.76 0.11 100.0 SNHG12-201 retained intron diencephalon (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 3534.00 30.17 10.08 89.65 RPL3-212 retained intron diencephalon (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 4664.00 39.81 13.31 100.0 RPL3-212 retained intron diencephalon (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 34706.00 96.93 99.01 100.0 SMC1A-204 retained intron diencephalon (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 18470.00 89.63 52.69 98.37 RABGGTB-208 protein coding CDS not defined diencephalon (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 8721.00 52.27 24.88 77.45 DDX39B-219 retained intron diencephalon (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 667.00 4.00 1.90 100.0 DDX39B-219 retained intron diencephalon (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1383.00 8.29 3.95 100.0 DDX39B-219 retained intron diencephalon (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 2427.00 78.27 6.92 100.0 RPS8-206 protein coding CDS not defined diencephalon (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 62697.00 93.96 178.87 99.17 RPL13-207 retained intron diencephalon (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 1270.00 1.90 3.62 100.0 RPL13-207 retained intron diencephalon (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 1282.00 0.31 3.66 53.22 EIF4A2-219 retained intron diencephalon (Tissue)