ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 3.00 1.54 0.01 100.0 HCN2-201 protein coding spinal cord (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 1332.00 86.95 2.44 100.0 SLC49A4-201 protein coding spinal cord (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 3206.00 19.37 5.88 100.0 ATP5MC3-201 protein coding spinal cord (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 1395.00 84.29 2.56 100.0 CDC25A-201 protein coding spinal cord (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 1745.00 66.91 3.20 100.0 BLOC1S4-201 protein coding spinal cord (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 814.00 6.45 1.49 100.0 ATAD5-201 protein coding spinal cord (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 2654.00 42.72 4.87 100.0 SLITRK5-201 protein coding spinal cord (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 50.00 40.00 0.09 100.0 HASPIN-201 protein coding spinal cord (Tissue)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 3674.00 58.94 6.74 100.0 PRR14L-201 protein coding spinal cord (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 8536.00 97.91 15.65 100.0 ATG101-201 protein coding spinal cord (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 10017.00 87.28 18.37 100.0 PRICKLE1-201 protein coding spinal cord (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 3729.00 96.56 6.84 98.29 MIR133A2-201 miRNA spinal cord (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 50.00 14.66 0.09 100.0 PBLD-204 protein coding spinal cord (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 1261628.00 88.18 2313.40 98.9 MIRLET7BHG-201 lncRNA spinal cord (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 110279.00 7.71 202.21 91.84 MIRLET7BHG-201 lncRNA spinal cord (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 13.00 0.85 0.02 22.41 MIR375-201 miRNA spinal cord (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 1503.00 97.72 2.76 98.88 MIR375-201 miRNA spinal cord (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 13959.00 74.84 25.60 100.0 MIR30E-201 miRNA spinal cord (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 2980.00 15.98 5.46 100.0 MIR30E-201 miRNA spinal cord (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 1940.00 56.49 3.56 100.0 MIR29A-201 miRNA spinal cord (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 1093.00 81.02 2.00 100.0 MIR345-201 miRNA spinal cord (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 228115.00 98.09 418.29 100.0 MIR16-2-201 miRNA spinal cord (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 2320.00 4.45 4.25 100.0 MIR340-201 miRNA spinal cord (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 46842.00 89.88 85.89 100.0 MIR340-201 miRNA spinal cord (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 23787.00 80.17 43.62 100.0 MIR107-201 miRNA spinal cord (Tissue)