ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-75035113 tRNA-transcript-chr17-75035113_1_33_+ 1–33 651.00 23.25 1.19 100.0 TRNA-TRANSCRIPT-CHR17-75035113 Arg tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 31.00 0.27 0.06 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 32.00 0.28 0.06 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 105.00 0.93 0.19 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 99.00 0.88 0.18 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 185.00 1.64 0.34 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 29.00 0.26 0.05 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 8330.00 0.31 15.27 92.43 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 5669.00 0.21 10.40 64.52 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 2454.00 0.09 4.50 54.99 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 3105.00 15.00 5.69 28.59 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 7435.00 96.90 13.63 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 1712.00 20.42 3.14 95.27 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 2000.00 91.87 3.67 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 641.00 0.30 1.18 77.42 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 187.00 0.09 0.34 22.58 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 147200.00 69.71 269.92 88.26 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 41363.54 43.04 75.85 52.41 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 2025.00 2.11 3.71 77.94 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 42898.47 44.64 78.66 53.05 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 433738.00 93.14 795.33 98.15 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 1865.00 14.53 3.42 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 8736.00 42.62 16.02 87.7 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 306.00 0.01 0.56 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 561.00 0.04 1.03 47.7 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA spinal cord (Tissue)