ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 29.00 0.20 0.05 16.29 LINC02739-203 lncRNA spinal cord (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 2044.00 13.91 3.75 100.0 LINC02739-203 lncRNA spinal cord (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 2738.00 18.63 5.02 100.0 LINC02739-203 lncRNA spinal cord (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 37.00 0.25 0.07 100.0 LINC02739-203 lncRNA spinal cord (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 149.00 1.01 0.27 83.71 LINC02739-203 lncRNA spinal cord (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 19382.00 91.74 35.54 100.0 MIR124-1HG-216 lncRNA spinal cord (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 292.00 12.23 0.54 100.0 SNHG10-212 lncRNA spinal cord (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 44032.35 42.61 80.74 45.11 SNHG19-202 lncRNA spinal cord (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 53521.84 51.79 98.14 65.01 SNHG19-202 lncRNA spinal cord (Tissue)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 23.31 0.02 0.04 86.33 SNHG19-202 lncRNA spinal cord (Tissue)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 5.04 0.00 0.01 72.05 SNHG19-202 lncRNA spinal cord (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 5342.00 22.61 9.80 100.0 MIR222HG-206 lncRNA spinal cord (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 13226.00 55.97 24.25 83.62 MIR222HG-206 lncRNA spinal cord (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 154.00 0.65 0.28 100.0 MIR222HG-206 lncRNA spinal cord (Tissue)
ENST00000688371.3 ENST00000688371.3_313_335_+ 313–335 2.00 5.88 0.00 100.0 MIR302CHG-205 lncRNA spinal cord (Tissue)
ENST00000688371.3 ENST00000688371.3_190_212_+ 190–212 3.78 11.12 0.01 63.0 MIR302CHG-205 lncRNA spinal cord (Tissue)
ENST00000688371.3 ENST00000688371.3_190_210_+ 190–210 3.04 8.94 0.01 50.67 MIR302CHG-205 lncRNA spinal cord (Tissue)
ENST00000688371.3 ENST00000688371.3_493_514_+ 493–514 6.00 17.65 0.01 100.0 MIR302CHG-205 lncRNA spinal cord (Tissue)
ENST00000688371.3 ENST00000688371.3_673_694_+ 673–694 6.00 17.65 0.01 100.0 MIR302CHG-205 lncRNA spinal cord (Tissue)
ENST00000688371.3 ENST00000688371.3_458_478_+ 458–478 6.00 17.65 0.01 85.71 MIR302CHG-205 lncRNA spinal cord (Tissue)
ENST00000688371.3 ENST00000688371.3_458_481_+ 458–481 1.00 2.94 0.00 20.0 MIR302CHG-205 lncRNA spinal cord (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 12.00 3.31 0.02 100.0 RPSA-216 retained intron spinal cord (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 6530.00 1.58 11.97 74.12 MIR99AHG-370 lncRNA spinal cord (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 395011.00 95.45 724.32 98.89 MIR99AHG-370 lncRNA spinal cord (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 192.00 80.00 0.35 100.0 HPS4-237 retained intron spinal cord (Tissue)