ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 674.00 0.06 1.24 100.0 C19orf48P-203 retained intron spinal cord (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 809974.78 77.41 1485.22 83.64 C19orf48P-203 retained intron spinal cord (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 231877.02 22.16 425.18 22.54 C19orf48P-203 retained intron spinal cord (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 1884.00 0.18 3.45 82.45 C19orf48P-203 retained intron spinal cord (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 133.00 0.01 0.24 100.0 C19orf48P-203 retained intron spinal cord (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 16.00 0.00 0.03 100.0 C19orf48P-203 retained intron spinal cord (Tissue)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 14.00 63.64 0.03 100.0 ENST00000597420 lncRNA spinal cord (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 108.00 2.81 0.20 100.0 RPS11-206 retained intron spinal cord (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 3050.00 79.41 5.59 100.0 RPS11-206 retained intron spinal cord (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 111403.00 59.53 204.28 61.66 CARMN-209 lncRNA spinal cord (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 3800.00 29.29 6.97 100.0 ENST00000602478 lncRNA spinal cord (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 4.00 25.00 0.01 100.0 PPFIA1P1-201 processed pseudogene spinal cord (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 2555.00 22.35 4.69 100.0 SNORD114-21-201 snoRNA spinal cord (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 4281.00 37.45 7.85 100.0 SNORD114-21-201 snoRNA spinal cord (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 93.00 0.21 0.17 100.0 SNORD115-40-201 snoRNA spinal cord (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 80567.00 98.50 147.73 100.0 MIR98-201 miRNA spinal cord (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 82560.00 95.88 151.39 100.0 SNORD113-5-201 snoRNA spinal cord (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 8628.00 94.19 15.82 100.0 MIR15A-201 miRNA spinal cord (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 1303.00 81.74 2.39 100.0 MIR376C-201 miRNA spinal cord (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 2326.00 50.72 4.27 100.0 SNHG21-206 retained intron spinal cord (Tissue)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 92.00 10.33 0.17 100.0 SNORD11B-201 snoRNA spinal cord (Tissue)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 4066.00 73.02 7.46 100.0 SNORD91B-201 snoRNA spinal cord (Tissue)
ENST00000608502.2 ENST00000608502.2_858_879_+ 858–879 31687.00 66.99 58.10 100.0 MIR219A2HG-201 lncRNA spinal cord (Tissue)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 15714.00 59.55 28.81 72.18 SNORD91A-201 snoRNA spinal cord (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 148731.00 47.40 272.72 97.12 MIR486-1-201 miRNA spinal cord (Tissue)