ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 3270.00 0.32 6.00 100.0 RPL21-209 retained intron spinal cord (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 2635.00 0.26 4.83 100.0 RPL21-209 retained intron spinal cord (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 614.00 36.20 1.13 100.0 GABRE-209 retained intron spinal cord (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 11.00 0.00 0.02 100.0 RPL13A-212 retained intron spinal cord (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 11.00 0.00 0.02 100.0 RPL13A-212 retained intron spinal cord (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 723.00 0.17 1.33 100.0 RPL13A-212 retained intron spinal cord (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 4885.00 1.13 8.96 100.0 RPL13A-212 retained intron spinal cord (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 19020.00 4.38 34.88 83.04 RPL13A-212 retained intron spinal cord (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 437.00 0.10 0.80 100.0 RPL13A-212 retained intron spinal cord (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 2300.00 0.53 4.22 62.16 RPL13A-212 retained intron spinal cord (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 352459.00 81.22 646.29 97.95 RPL13A-212 retained intron spinal cord (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 1415.00 11.64 2.59 100.0 RPL7A-207 protein coding CDS not defined spinal cord (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 6027.00 49.57 11.05 86.37 RPL7A-207 protein coding CDS not defined spinal cord (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 185.00 1.52 0.34 100.0 RPL7A-207 protein coding CDS not defined spinal cord (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 4820.00 5.32 8.84 100.0 RN7SL2-201 misc RNA spinal cord (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 3095.00 3.41 5.68 56.75 RN7SL2-201 misc RNA spinal cord (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 19811.00 62.13 36.33 79.29 NOP56-217 protein coding CDS not defined spinal cord (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 3205.00 10.05 5.88 86.23 NOP56-217 protein coding CDS not defined spinal cord (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 542.00 0.46 0.99 38.74 RABGGTB-213 protein coding CDS not defined spinal cord (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 1019.00 0.87 1.87 100.0 RABGGTB-213 protein coding CDS not defined spinal cord (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 900.00 0.77 1.65 100.0 RABGGTB-213 protein coding CDS not defined spinal cord (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 857.00 0.73 1.57 61.26 RABGGTB-213 protein coding CDS not defined spinal cord (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 72017.00 61.38 132.05 89.9 RABGGTB-213 protein coding CDS not defined spinal cord (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 24149.00 20.58 44.28 97.41 RABGGTB-213 protein coding CDS not defined spinal cord (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 76.00 0.06 0.14 100.0 RABGGTB-213 protein coding CDS not defined spinal cord (Tissue)