ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 7322.00 73.44 13.43 100.0 RPS8-206 protein coding CDS not defined spinal cord (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 1998.00 1.31 3.66 100.0 RPL13-207 retained intron spinal cord (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 143934.00 94.69 263.93 99.33 RPL13-207 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 1072.00 0.11 1.97 100.0 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 129035.00 12.94 236.61 78.33 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 7542.00 0.76 13.83 82.78 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 2807.00 0.28 5.15 37.16 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 18555.00 1.86 34.02 65.89 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 1231.00 0.12 2.26 62.9 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 4595.00 0.46 8.43 50.73 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 93853.00 9.41 172.09 62.57 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 485.00 0.05 0.89 100.0 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 569107.00 57.05 1043.55 96.01 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 2380.00 0.24 4.36 100.0 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 9834.00 0.99 18.03 39.14 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 2.00 0.00 0.00 100.0 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 331.00 0.03 0.61 100.0 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 6639.00 0.67 12.17 65.67 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 69294.00 95.82 127.06 100.0 RPS8-207 protein coding CDS not defined spinal cord (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 760.00 22.57 1.39 100.0 RPL7A-206 protein coding CDS not defined spinal cord (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 526.00 15.62 0.96 100.0 RPL7A-206 protein coding CDS not defined spinal cord (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 334.00 9.92 0.61 100.0 RPL7A-206 protein coding CDS not defined spinal cord (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 2635.00 0.26 4.83 100.0 RPL21-209 retained intron spinal cord (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 903.00 0.09 1.66 100.0 RPL21-209 retained intron spinal cord (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 68194.00 6.70 125.04 98.58 RPL21-209 retained intron spinal cord (Tissue)