ENCFF001RLW

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 37294.00 91.73 120.86 100.0 GAS5-377 lncRNA occipital lobe (Tissue)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 1912.00 4.70 6.20 100.0 GAS5-377 lncRNA occipital lobe (Tissue)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 130.00 0.32 0.42 100.0 GAS5-377 lncRNA occipital lobe (Tissue)
ENST00000830954.1 ENST00000830954.1_968_989_+ 968–989 3.00 75.00 0.01 100.0 MIR205HG-245 lncRNA occipital lobe (Tissue)
ENST00000833535.1 ENST00000833535.1_763_828_+ 763–828 53.00 5.36 0.17 100.0 TAF12-DT-204 lncRNA occipital lobe (Tissue)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 243860.00 96.99 790.29 99.73 ZFAS1-238 lncRNA occipital lobe (Tissue)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 333.00 0.13 1.08 100.0 ZFAS1-238 lncRNA occipital lobe (Tissue)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 1658.00 0.66 5.37 100.0 ZFAS1-238 lncRNA occipital lobe (Tissue)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 646.00 0.26 2.09 100.0 ZFAS1-238 lncRNA occipital lobe (Tissue)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 36650.00 88.81 118.77 100.0 ZFAS1-242 lncRNA occipital lobe (Tissue)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 3664.00 8.88 11.87 100.0 ZFAS1-242 lncRNA occipital lobe (Tissue)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 42.00 53.16 0.14 100.0 ENST00000837997 lncRNA occipital lobe (Tissue)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 8.00 10.13 0.03 100.0 ENST00000837997 lncRNA occipital lobe (Tissue)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 1942.00 70.70 6.29 80.92 ENST00000839036 lncRNA occipital lobe (Tissue)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 9.00 10.23 0.03 100.0 ENST00000849527 lncRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 1285.00 63.36 4.16 75.54 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 13.00 0.64 0.04 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 881.00 1.47 2.86 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 346.00 60.17 1.12 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 67.00 11.65 0.22 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 22.00 12.15 0.07 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 118.00 9.92 0.38 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 267.00 61.66 0.87 94.01 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 11.00 0.02 0.04 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR1-159141611 tRNA-transcript-chr1-159141611_3_20_+ 3–20 284.00 32.91 0.92 100.0 TRNA-TRANSCRIPT-CHR1-159141611 Arg tRNA occipital lobe (Tissue)