ENCFF001RLW

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 11458.26 39.98 37.13 58.64 RPL17-214 retained intron occipital lobe (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 97.00 0.03 0.31 100.0 SNORD43-201 snoRNA occipital lobe (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 290195.00 99.48 940.45 99.98 SNORD43-201 snoRNA occipital lobe (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 93.00 0.03 0.30 100.0 SNORD43-201 snoRNA occipital lobe (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 222.00 40.29 0.72 100.0 MIR151B-201 miRNA occipital lobe (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 82.00 0.86 0.27 100.0 SNORD3A-201 snoRNA occipital lobe (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 15555.00 92.47 50.41 100.0 SNORD92-201 snoRNA occipital lobe (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 4537.00 67.39 14.70 100.0 NSRP1-214 protein coding occipital lobe (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 1490.00 22.13 4.83 83.05 NSRP1-214 protein coding occipital lobe (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 37.00 1.55 0.12 100.0 MIR23AHG-201 lncRNA occipital lobe (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 647.00 27.17 2.10 90.49 MIR23AHG-201 lncRNA occipital lobe (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 536.00 22.51 1.74 86.04 MIR23AHG-201 lncRNA occipital lobe (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 579.00 24.32 1.88 91.04 MIR23AHG-201 lncRNA occipital lobe (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 127.00 5.33 0.41 45.36 MIR23AHG-201 lncRNA occipital lobe (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 8.00 25.81 0.03 100.0 ODAD3-204 nonsense mediated decay occipital lobe (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 38.00 0.31 0.12 100.0 VMP1-217 retained intron occipital lobe (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 5.00 0.04 0.02 100.0 VMP1-217 retained intron occipital lobe (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 7152.00 58.01 23.18 60.87 VMP1-217 retained intron occipital lobe (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 194.00 0.05 0.63 100.0 C19orf48P-203 retained intron occipital lobe (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 283799.85 77.21 919.73 85.23 C19orf48P-203 retained intron occipital lobe (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 83636.86 22.75 271.05 23.18 C19orf48P-203 retained intron occipital lobe (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 3267.00 0.89 10.59 90.6 C19orf48P-203 retained intron occipital lobe (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 27.00 0.01 0.09 100.0 C19orf48P-203 retained intron occipital lobe (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 8.00 0.00 0.03 100.0 C19orf48P-203 retained intron occipital lobe (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 330.00 7.77 1.07 100.0 RPS11-206 retained intron occipital lobe (Tissue)