ENCFF001RLW

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 51661.00 92.40 167.42 94.64 SNORD53B-201 snoRNA occipital lobe (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 264.00 0.47 0.86 34.51 SNORD53B-201 snoRNA occipital lobe (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 501.00 0.90 1.62 65.49 SNORD53B-201 snoRNA occipital lobe (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 140.00 86.42 0.45 100.0 ENST00000578036 lncRNA occipital lobe (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 3115.00 91.24 10.09 100.0 RPL23A-207 protein coding occipital lobe (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 908.00 92.09 2.94 100.0 MIR744-201 miRNA occipital lobe (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 13.00 68.42 0.04 100.0 MIR378C-201 miRNA occipital lobe (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 2.00 0.18 0.01 100.0 MIR142HG-201 lncRNA occipital lobe (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 783.00 70.16 2.54 78.61 MIR142HG-201 lncRNA occipital lobe (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 38.00 3.41 0.12 9.87 MIR142HG-201 lncRNA occipital lobe (Tissue)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 1004.00 11.36 3.25 100.0 SNORD3C-201 snoRNA occipital lobe (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 254.40 0.13 0.82 68.02 RPL23A-208 retained intron occipital lobe (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 101.90 0.05 0.33 45.49 RPL23A-208 retained intron occipital lobe (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 145096.00 76.72 470.22 88.93 RPL23A-208 retained intron occipital lobe (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 42537.00 22.49 137.85 93.05 RPL23A-208 retained intron occipital lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 2570.00 3.42 8.33 40.75 RPL17-211 retained intron occipital lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 6111.00 8.13 19.80 46.77 RPL17-211 retained intron occipital lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 214.00 0.28 0.69 100.0 RPL17-211 retained intron occipital lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 39330.00 52.34 127.46 96.66 RPL17-211 retained intron occipital lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 24963.00 33.22 80.90 97.68 RPL17-211 retained intron occipital lobe (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 1602.00 49.54 5.19 70.51 ENST00000582320 lncRNA occipital lobe (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 559.00 17.29 1.81 100.0 ENST00000582320 lncRNA occipital lobe (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 286.00 8.84 0.93 100.0 ENST00000582320 lncRNA occipital lobe (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 7402.00 25.83 23.99 100.0 RPL17-214 retained intron occipital lobe (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 6508.64 22.71 21.09 40.37 RPL17-214 retained intron occipital lobe (Tissue)