ENCFF001RLW

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 1.00 0.00 0.00 100.0 RPL13A-212 retained intron occipital lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 644.00 0.64 2.09 62.59 RPL13A-212 retained intron occipital lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 3.00 0.00 0.01 100.0 RPL13A-212 retained intron occipital lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 5886.00 5.86 19.08 72.52 RPL13A-212 retained intron occipital lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 31.00 0.03 0.10 100.0 RPL13A-212 retained intron occipital lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 124.00 0.12 0.40 100.0 RPL13A-212 retained intron occipital lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 1528.00 1.52 4.95 100.0 RPL13A-212 retained intron occipital lobe (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 327.00 3.10 1.06 100.0 RPL7A-207 protein coding CDS not defined occipital lobe (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 347.00 3.29 1.12 100.0 RPL7A-207 protein coding CDS not defined occipital lobe (Tissue)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 2.00 0.02 0.01 100.0 RPL7A-207 protein coding CDS not defined occipital lobe (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 7266.00 68.98 23.55 88.09 RPL7A-207 protein coding CDS not defined occipital lobe (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 695.00 3.58 2.25 54.47 RN7SL2-201 misc RNA occipital lobe (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 920.00 4.74 2.98 100.0 RN7SL2-201 misc RNA occipital lobe (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 3281.00 10.03 10.63 93.9 NOP56-217 protein coding CDS not defined occipital lobe (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 23179.00 70.85 75.12 83.71 NOP56-217 protein coding CDS not defined occipital lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 340.00 0.79 1.10 100.0 RABGGTB-213 protein coding CDS not defined occipital lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 110.00 0.26 0.36 42.97 RABGGTB-213 protein coding CDS not defined occipital lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 19865.00 46.42 64.38 91.71 RABGGTB-213 protein coding CDS not defined occipital lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 383.00 0.90 1.24 100.0 RABGGTB-213 protein coding CDS not defined occipital lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 17365.00 40.58 56.28 94.83 RABGGTB-213 protein coding CDS not defined occipital lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 47.00 0.11 0.15 100.0 RABGGTB-213 protein coding CDS not defined occipital lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 146.00 0.34 0.47 57.03 RABGGTB-213 protein coding CDS not defined occipital lobe (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 3099.00 8.53 10.04 100.0 GNL3-211 retained intron occipital lobe (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 31471.00 86.63 101.99 100.0 GNL3-211 retained intron occipital lobe (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 4843.00 82.72 15.70 100.0 RPL5-205 retained intron occipital lobe (Tissue)