ENCFF001RLW

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1765.00 0.25 5.72 53.98 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 2168.00 0.31 7.03 100.0 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 6585.00 0.93 21.34 81.33 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 2800.00 0.39 9.07 94.95 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 715.00 0.10 2.32 57.75 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 46.00 0.01 0.15 48.94 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 3383.00 0.48 10.96 83.39 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 75296.00 10.62 244.02 59.55 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 442.00 0.06 1.43 100.0 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 603871.00 85.15 1957.00 99.3 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 626.00 0.09 2.03 49.88 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 22.00 0.00 0.07 100.0 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 278.00 0.04 0.90 100.0 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 35.00 0.00 0.11 100.0 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 14108.00 97.73 45.72 100.0 RPS8-207 protein coding CDS not defined occipital lobe (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 159.00 9.16 0.52 100.0 RPL7A-206 protein coding CDS not defined occipital lobe (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 630.00 36.29 2.04 100.0 RPL7A-206 protein coding CDS not defined occipital lobe (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 350.00 20.16 1.13 100.0 RPL7A-206 protein coding CDS not defined occipital lobe (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 1359765.00 92.74 4406.68 99.44 RPL21-209 retained intron occipital lobe (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 944.00 0.06 3.06 100.0 RPL21-209 retained intron occipital lobe (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 95628.00 6.52 309.91 97.93 RPL21-209 retained intron occipital lobe (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 829.00 0.06 2.69 100.0 RPL21-209 retained intron occipital lobe (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 4353.00 0.30 14.11 100.0 RPL21-209 retained intron occipital lobe (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 38.00 26.76 0.12 100.0 GABRE-209 retained intron occipital lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 3.00 0.00 0.01 100.0 RPL13A-212 retained intron occipital lobe (Tissue)