ENCFF001RLW

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 51866.00 96.78 168.09 98.97 SNORD19C-201 snoRNA occipital lobe (Tissue)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 1678.00 1.59 5.44 100.0 SNORD12B-201 snoRNA occipital lobe (Tissue)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 91.00 0.09 0.29 100.0 SNORD12B-201 snoRNA occipital lobe (Tissue)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 100280.00 95.22 324.98 98.86 SNORD12B-201 snoRNA occipital lobe (Tissue)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 3146.00 35.88 10.20 100.0 Y_RNA.609-201 misc RNA occipital lobe (Tissue)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 379.00 22.61 1.23 100.0 Y_RNA.612-201 misc RNA occipital lobe (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 146056.00 96.18 473.33 99.12 SNORD71-201 snoRNA occipital lobe (Tissue)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 3003.00 1.98 9.73 100.0 SNORD71-201 snoRNA occipital lobe (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 397.00 0.26 1.29 100.0 SNORD71-201 snoRNA occipital lobe (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 5060.00 74.93 16.40 91.52 MIR194-2HG-201 lncRNA occipital lobe (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 1278.00 18.92 4.14 62.89 MIR194-2HG-201 lncRNA occipital lobe (Tissue)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 11.00 1.40 0.04 100.0 LINC01783-201 lncRNA occipital lobe (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 6.00 75.00 0.02 100.0 RPS7P15-201 processed pseudogene occipital lobe (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 16.00 0.34 0.05 100.0 SNORD62B-201 snoRNA occipital lobe (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 1644.00 35.43 5.33 90.48 SNORD62B-201 snoRNA occipital lobe (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 186.00 4.01 0.60 100.0 SNORD62B-201 snoRNA occipital lobe (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 533.00 11.49 1.73 100.0 SNORD62B-201 snoRNA occipital lobe (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 583.00 12.56 1.89 100.0 SNORD62B-201 snoRNA occipital lobe (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 31.00 93.94 0.10 100.0 MRPL32-203 nonsense mediated decay occipital lobe (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 419.00 97.22 1.36 100.0 ENST00000436739 lncRNA occipital lobe (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 768.00 15.96 2.49 100.0 TMEM107-204 protein coding occipital lobe (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 804.00 16.71 2.61 65.21 TMEM107-204 protein coding occipital lobe (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 222.00 4.61 0.72 100.0 TMEM107-204 protein coding occipital lobe (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 48.00 1.00 0.16 100.0 TMEM107-204 protein coding occipital lobe (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 60.00 1.25 0.19 67.42 TMEM107-204 protein coding occipital lobe (Tissue)