ENCFF001RLW

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387459.1 ENST00000387459.1_24_69_+ 24–69 591.00 0.18 1.92 100.0 MT-TE-201 Mt tRNA occipital lobe (Tissue)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 287773.00 87.91 932.60 92.27 MT-TE-201 Mt tRNA occipital lobe (Tissue)
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 1.00 100.00 0.00 100.0 MIR196A1-201 miRNA occipital lobe (Tissue)
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 172.00 3.17 0.56 100.0 MT-RNR1-201 Mt rRNA occipital lobe (Tissue)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 685.00 12.62 2.22 100.0 MT-RNR1-201 Mt rRNA occipital lobe (Tissue)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 3145.00 82.57 10.19 100.0 MIR454-201 miRNA occipital lobe (Tissue)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 199.00 70.07 0.64 100.0 MIR501-201 miRNA occipital lobe (Tissue)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 5054.00 94.66 16.38 100.0 MIR769-201 miRNA occipital lobe (Tissue)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 31.00 86.11 0.10 100.0 KRTAP19-1-201 protein coding occipital lobe (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 1192.00 18.13 3.86 100.0 MIR708-201 miRNA occipital lobe (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 14.00 73.68 0.05 100.0 MIR509-3-201 miRNA occipital lobe (Tissue)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 19.00 43.18 0.06 100.0 MIR543-201 miRNA occipital lobe (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 540.00 96.60 1.75 100.0 MIR301B-201 miRNA occipital lobe (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 1128.00 47.72 3.66 84.3 RNU1-82P-201 snRNA occipital lobe (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 1318.00 21.74 4.27 77.9 SNORD66-201 snoRNA occipital lobe (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 9.00 0.15 0.03 100.0 SNORD66-201 snoRNA occipital lobe (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 263.00 4.34 0.85 100.0 SNORD66-201 snoRNA occipital lobe (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 2460.00 40.58 7.97 100.0 SNORD66-201 snoRNA occipital lobe (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 403.00 77.80 1.31 100.0 U3.17-201 snoRNA occipital lobe (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 1240.00 55.96 4.02 100.0 SNORD17-201 snoRNA occipital lobe (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 59.00 56.73 0.19 100.0 SNORD72-201 snoRNA occipital lobe (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 2759.00 82.19 8.94 100.0 SNORD70B-201 snoRNA occipital lobe (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 5698.00 79.75 18.47 97.37 RNY4P18-201 misc RNA occipital lobe (Tissue)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 79271.00 96.19 256.90 100.0 SNORD90-201 snoRNA occipital lobe (Tissue)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 1285.00 1.56 4.16 19.12 SNORD90-201 snoRNA occipital lobe (Tissue)