ENCFF001RLV

Library Details

Organism: Homo Sapiens
Biosample: tongue (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGF
Description: Part of ENCODE experiment ENCSR000AGF. The libraries contained in this experiment come from human fetal tongue tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 698.00 23.27 1.89 100.0 GABRE-209 retained intron tongue (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 2437.00 0.98 6.61 79.07 RPL13A-212 retained intron tongue (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 3983.00 1.60 10.80 100.0 RPL13A-212 retained intron tongue (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 169814.00 68.13 460.66 96.8 RPL13A-212 retained intron tongue (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 22177.00 8.90 60.16 75.62 RPL13A-212 retained intron tongue (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 637.00 0.26 1.73 100.0 RPL13A-212 retained intron tongue (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 5.00 0.00 0.01 100.0 RPL13A-212 retained intron tongue (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 14.00 0.01 0.04 100.0 RPL13A-212 retained intron tongue (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 729.00 0.29 1.98 100.0 RPL13A-212 retained intron tongue (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 179.00 5.11 0.49 100.0 RPL7A-207 protein coding CDS not defined tongue (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 1706.00 48.67 4.63 85.34 RPL7A-207 protein coding CDS not defined tongue (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 47.00 1.34 0.13 100.0 RPL7A-207 protein coding CDS not defined tongue (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 5008.00 5.11 13.59 100.0 RN7SL2-201 misc RNA tongue (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 2913.00 2.97 7.90 49.92 RN7SL2-201 misc RNA tongue (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 1.00 20.00 0.00 100.0 RGS11-208 retained intron tongue (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 32603.00 67.82 88.44 76.58 NOP56-217 protein coding CDS not defined tongue (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 2271.00 4.72 6.16 85.38 NOP56-217 protein coding CDS not defined tongue (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 280.00 0.25 0.76 49.47 RABGGTB-213 protein coding CDS not defined tongue (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 333.00 0.29 0.90 100.0 RABGGTB-213 protein coding CDS not defined tongue (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 373.00 0.33 1.01 100.0 RABGGTB-213 protein coding CDS not defined tongue (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 286.00 0.25 0.78 50.53 RABGGTB-213 protein coding CDS not defined tongue (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 56019.00 49.21 151.97 88.76 RABGGTB-213 protein coding CDS not defined tongue (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 40412.00 35.50 109.63 97.39 RABGGTB-213 protein coding CDS not defined tongue (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 115.00 0.10 0.31 100.0 RABGGTB-213 protein coding CDS not defined tongue (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 14177.00 67.88 38.46 100.0 GNL3-211 retained intron tongue (Tissue)