ENCFF000JEI

Library Details

Organism: Homo Sapiens
Biosample: fibroblast of the aortic adventitia (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUV
Description: Part of ENCODE experiment ENCSR000CUV. The libraries contained in this experiment come from aortic adventital fibroblast primary whole cells, HAoAF isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 1372.00 0.23 72.51 100.0 GAS5-230 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 1.00 0.00 0.05 100.0 GAS5-230 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 79981.00 13.14 4226.97 82.23 GAS5-230 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 2368.00 72.22 125.15 100.0 ENST00000651540 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 128426.00 29.79 6787.28 99.74 SNHG29-232 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 264147.00 61.28 13960.10 90.95 SNHG29-232 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 1930.00 0.45 102.00 100.0 SNHG29-232 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 56.00 0.01 2.96 100.0 SNHG29-232 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 1.00 0.60 0.05 100.0 SNHG14-234 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 1.00 0.60 0.05 100.0 SNHG14-234 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 4597.00 22.22 242.95 100.0 SNHG1-248 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 4496.00 21.73 237.61 100.0 SNHG1-248 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 4966.00 24.01 262.45 100.0 SNHG1-248 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 1.00 0.11 0.05 100.0 SNHG14-315 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 1182.00 3.45 62.47 100.0 SNHG5-273 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 12698.00 37.05 671.09 83.68 SNHG5-273 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 14047.00 40.98 742.38 88.33 SNHG5-273 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 2.00 0.01 0.11 100.0 SNHG5-273 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 705.00 78.07 37.26 100.0 SNHG14-336 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 1110.00 62.93 58.66 100.0 NCL-216 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 12504.92 56.89 660.88 82.17 SNHG19-202 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 2510.85 11.42 132.70 28.71 SNHG19-202 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 985.00 41.86 52.06 100.0 SNHG8-214 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 2266.00 85.19 119.76 100.0 ENST00000722183 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 38.00 84.44 2.01 100.0 ENST00000747512 lncRNA fibroblast of the aortic adventitia (Primary cell)