ENCFF001RLU

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 4998.00 53.52 16.98 96.19 RNY4P18-201 misc RNA spinal cord (Tissue)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 56424.00 94.43 191.68 100.0 SNORD90-201 snoRNA spinal cord (Tissue)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 564.00 0.94 1.92 16.49 SNORD90-201 snoRNA spinal cord (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 1474.00 1.42 5.01 100.0 SNORD69-201 snoRNA spinal cord (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 1236.00 1.19 4.20 100.0 SNORD69-201 snoRNA spinal cord (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 1569.00 1.51 5.33 100.0 SNORD69-201 snoRNA spinal cord (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 94718.00 91.01 321.78 100.0 SNORD69-201 snoRNA spinal cord (Tissue)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 1937.00 55.17 6.58 72.11 SNORD70-201 snoRNA spinal cord (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 3963.00 70.20 13.46 78.98 B4GALNT2-202 protein coding spinal cord (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 132.00 2.34 0.45 100.0 B4GALNT2-202 protein coding spinal cord (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 1580.00 93.38 5.37 100.0 NDE1-202 protein coding spinal cord (Tissue)
ENST00000401172.1 ENST00000401172.1_46_67_+ 46–67 16.00 100.00 0.05 100.0 MIR208B-201 miRNA spinal cord (Tissue)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 1928.00 63.50 6.55 100.0 MIR450B-201 miRNA spinal cord (Tissue)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 680.00 58.87 2.31 100.0 MIR887-201 miRNA spinal cord (Tissue)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 6685.00 91.88 22.71 100.0 MIR889-201 miRNA spinal cord (Tissue)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 2941.00 78.43 9.99 100.0 SNORD111-201 snoRNA spinal cord (Tissue)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 2845.00 63.96 9.67 82.34 SNORD88A-201 snoRNA spinal cord (Tissue)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 277.00 95.85 0.94 100.0 MIR548K-201 miRNA spinal cord (Tissue)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 465.00 59.92 1.58 100.0 MIR320B2-201 miRNA spinal cord (Tissue)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 45.00 84.91 0.15 100.0 MIR1271-201 miRNA spinal cord (Tissue)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 265.00 0.13 0.90 100.0 SNORD100-201 snoRNA spinal cord (Tissue)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 203783.00 96.81 692.30 100.0 SNORD100-201 snoRNA spinal cord (Tissue)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 1110.00 0.53 3.77 100.0 SNORD100-201 snoRNA spinal cord (Tissue)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 222.00 0.11 0.75 100.0 SNORD100-201 snoRNA spinal cord (Tissue)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 1348.00 72.09 4.58 100.0 SNORD111B-201 snoRNA spinal cord (Tissue)