ENCFF001RLU

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387459.1 ENST00000387459.1_40_67_+ 40–67 894.00 0.54 3.04 39.52 MT-TE-201 Mt tRNA spinal cord (Tissue)
ENST00000387459.1 ENST00000387459.1_24_69_+ 24–69 1880.00 1.14 6.39 100.0 MT-TE-201 Mt tRNA spinal cord (Tissue)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 132098.00 80.06 448.77 92.6 MT-TE-201 Mt tRNA spinal cord (Tissue)
ENST00000387459.1 ENST00000387459.1_39_69_+ 39–69 1368.00 0.83 4.65 67.52 MT-TE-201 Mt tRNA spinal cord (Tissue)
ENST00000387459.1 ENST00000387459.1_13_67_+ 13–67 567.00 0.34 1.93 100.0 MT-TE-201 Mt tRNA spinal cord (Tissue)
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 4762.00 64.00 16.18 100.0 MIR196A1-201 miRNA spinal cord (Tissue)
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 426.00 3.76 1.45 100.0 MT-RNR1-201 Mt rRNA spinal cord (Tissue)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 569.00 5.02 1.93 100.0 MT-RNR1-201 Mt rRNA spinal cord (Tissue)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 4028.00 81.31 13.68 100.0 MIR454-201 miRNA spinal cord (Tissue)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 50.00 17.42 0.17 100.0 MIR501-201 miRNA spinal cord (Tissue)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 15478.00 93.80 52.58 100.0 MIR769-201 miRNA spinal cord (Tissue)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 40.00 70.18 0.14 100.0 KRTAP19-1-201 protein coding spinal cord (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 1413.00 43.40 4.80 100.0 MIR708-201 miRNA spinal cord (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 82.00 90.11 0.28 100.0 MIR509-3-201 miRNA spinal cord (Tissue)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 229.00 56.54 0.78 100.0 MIR543-201 miRNA spinal cord (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 96.00 91.43 0.33 100.0 MIR301B-201 miRNA spinal cord (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 5452.00 61.75 18.52 74.45 RNU1-82P-201 snRNA spinal cord (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 594.00 4.46 2.02 100.0 SNORD66-201 snoRNA spinal cord (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 4402.00 33.02 14.95 100.0 SNORD66-201 snoRNA spinal cord (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 24.00 0.18 0.08 100.0 SNORD66-201 snoRNA spinal cord (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 3002.00 22.52 10.20 77.73 SNORD66-201 snoRNA spinal cord (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 502.00 76.52 1.71 100.0 U3.17-201 snoRNA spinal cord (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 1710.00 40.65 5.81 100.0 SNORD17-201 snoRNA spinal cord (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 21.00 48.84 0.07 100.0 SNORD72-201 snoRNA spinal cord (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 2383.00 76.75 8.10 100.0 SNORD70B-201 snoRNA spinal cord (Tissue)