ENCFF001RLS

Library Details

Organism: Homo Sapiens
Biosample: parietal lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFY
Description: Part of ENCODE experiment ENCSR000AFY. The libraries contained in this experiment come from human fetal parietal lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 1435.00 74.35 5.08 81.58 MIR142HG-201 lncRNA parietal lobe (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 1.00 0.05 0.00 100.0 MIR142HG-201 lncRNA parietal lobe (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 41.00 2.12 0.15 7.72 MIR142HG-201 lncRNA parietal lobe (Tissue)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 692.00 5.34 2.45 100.0 SNORD3C-201 snoRNA parietal lobe (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 36.58 0.04 0.13 74.65 RPL23A-208 retained intron parietal lobe (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 9.74 0.01 0.03 31.42 RPL23A-208 retained intron parietal lobe (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 65674.00 75.50 232.33 89.65 RPL23A-208 retained intron parietal lobe (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 19735.00 22.69 69.82 91.53 RPL23A-208 retained intron parietal lobe (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 3.00 1.96 0.01 100.0 MIR133A1HG-202 lncRNA parietal lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 4842.00 5.12 17.13 49.41 RPL17-211 retained intron parietal lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 11824.00 12.50 41.83 57.72 RPL17-211 retained intron parietal lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 131.00 0.14 0.46 100.0 RPL17-211 retained intron parietal lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 44578.00 47.12 157.70 93.8 RPL17-211 retained intron parietal lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 26167.00 27.66 92.57 96.57 RPL17-211 retained intron parietal lobe (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 4546.00 54.74 16.08 72.49 ENST00000582320 lncRNA parietal lobe (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 1063.00 12.80 3.76 100.0 ENST00000582320 lncRNA parietal lobe (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 497.00 5.99 1.76 100.0 ENST00000582320 lncRNA parietal lobe (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 616.00 1.62 2.18 100.0 RPL17-214 retained intron parietal lobe (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 14940.55 39.21 52.86 48.64 RPL17-214 retained intron parietal lobe (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 19992.93 52.47 70.73 57.62 RPL17-214 retained intron parietal lobe (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 267.00 0.21 0.94 100.0 SNORD43-201 snoRNA parietal lobe (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 120159.00 96.55 425.09 99.97 SNORD43-201 snoRNA parietal lobe (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 318.00 0.26 1.12 100.0 SNORD43-201 snoRNA parietal lobe (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 195.00 34.82 0.69 100.0 MIR151B-201 miRNA parietal lobe (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 684.00 4.82 2.42 100.0 SNORD3A-201 snoRNA parietal lobe (Tissue)