ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 806.00 0.49 1.66 100.0 SNHG32-227 lncRNA GM12878 (Cell line)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 18407.00 83.43 38.02 100.0 B4GALT1-203 nonsense mediated decay GM12878 (Cell line)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 214.00 0.79 0.44 100.0 ENST00000722183 lncRNA GM12878 (Cell line)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 16178.00 59.79 33.41 93.89 ENST00000722183 lncRNA GM12878 (Cell line)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 522.00 1.93 1.08 100.0 ENST00000722183 lncRNA GM12878 (Cell line)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 234.00 81.82 0.48 100.0 MIR34BHG-202 lncRNA GM12878 (Cell line)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 2485.00 40.32 5.13 46.73 THBS3-AS1-228 lncRNA GM12878 (Cell line)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 1130.00 69.62 2.33 100.0 MIR200CHG-202 lncRNA GM12878 (Cell line)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 30.00 1.85 0.06 100.0 MIR200CHG-202 lncRNA GM12878 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 1852.00 34.58 3.83 100.0 SNHG16-266 lncRNA GM12878 (Cell line)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 893.00 16.67 1.84 100.0 SNHG16-266 lncRNA GM12878 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 581.00 10.85 1.20 100.0 SNHG16-266 lncRNA GM12878 (Cell line)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 29.00 0.54 0.06 100.0 SNHG16-266 lncRNA GM12878 (Cell line)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 2168.00 29.33 4.48 100.0 NR2F2-AS1-327 lncRNA GM12878 (Cell line)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 3338.00 4.37 6.89 41.84 ENST00000747675 lncRNA GM12878 (Cell line)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 30476.00 39.92 62.94 100.0 ENST00000747675 lncRNA GM12878 (Cell line)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 2325.00 3.05 4.80 41.06 ENST00000747675 lncRNA GM12878 (Cell line)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 2315.00 3.03 4.78 40.95 ENST00000747675 lncRNA GM12878 (Cell line)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 8561.00 11.21 17.68 100.0 ENST00000747675 lncRNA GM12878 (Cell line)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 2010.00 2.02 4.15 14.4 SNHG26-250 lncRNA GM12878 (Cell line)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 55001.00 55.19 113.60 94.58 SNHG26-250 lncRNA GM12878 (Cell line)
ENST00000752259.1 ENST00000752259.1_405_425_+ 405–425 6047.00 14.18 12.49 100.0 LINC02422-207 lncRNA GM12878 (Cell line)
ENST00000753088.1 ENST00000753088.1_508_523_+ 508–523 5770.00 8.56 11.92 100.0 ENST00000753088 lncRNA GM12878 (Cell line)
ENST00000753088.1 ENST00000753088.1_508_542_+ 508–542 1319.00 1.96 2.72 100.0 ENST00000753088 lncRNA GM12878 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_127_+ 98–127 2574.53 0.81 5.32 67.72 ENST00000756336 lncRNA GM12878 (Cell line)