ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 493920.00 97.56 1020.14 99.38 SNORD105B-201 snoRNA GM12878 (Cell line)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 6831.00 75.63 14.11 95.99 SNORD121B-201 snoRNA GM12878 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 124.00 1.15 0.26 100.0 SNORD127-201 snoRNA GM12878 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 9606.00 89.31 19.84 99.69 SNORD127-201 snoRNA GM12878 (Cell line)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 18472.00 70.83 38.15 100.0 SNORD42B-201 snoRNA GM12878 (Cell line)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 2595.00 3.47 5.36 100.0 RNY4P25-201 misc RNA GM12878 (Cell line)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 530.00 50.00 1.09 100.0 SNORD121A-201 snoRNA GM12878 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 8273.00 40.39 17.09 73.34 SNORD126-201 snoRNA GM12878 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 10152.00 49.57 20.97 67.75 SNORD126-201 snoRNA GM12878 (Cell line)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 19461.00 88.33 40.19 91.47 SNORD124-201 snoRNA GM12878 (Cell line)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 76.00 2.41 0.16 100.0 SNHG12-201 retained intron GM12878 (Cell line)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 19388.00 63.30 40.04 97.82 RPL3-212 retained intron GM12878 (Cell line)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 3323.00 10.85 6.86 100.0 RPL3-212 retained intron GM12878 (Cell line)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 60720.00 97.41 125.41 100.0 SMC1A-204 retained intron GM12878 (Cell line)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 252892.00 90.66 522.32 99.6 RABGGTB-208 protein coding CDS not defined GM12878 (Cell line)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 175.00 4.22 0.36 87.5 DDX39B-219 retained intron GM12878 (Cell line)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 653.00 15.74 1.35 100.0 DDX39B-219 retained intron GM12878 (Cell line)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1366.00 32.92 2.82 100.0 DDX39B-219 retained intron GM12878 (Cell line)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 16380.00 76.83 33.83 100.0 RPS8-206 protein coding CDS not defined GM12878 (Cell line)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 928.00 3.58 1.92 100.0 RPL13-207 retained intron GM12878 (Cell line)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 23063.00 89.07 47.63 99.95 RPL13-207 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 7165.00 0.32 14.80 91.13 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 6087.00 0.27 12.57 85.28 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2141.00 0.10 4.42 43.19 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 1028.00 0.05 2.12 34.72 EIF4A2-219 retained intron GM12878 (Cell line)