ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387459.1 ENST00000387459.1_1_57_+ 1–57 355.00 0.16 0.73 100.0 MT-TE-201 Mt tRNA GM12878 (Cell line)
ENST00000387459.1 ENST00000387459.1_13_67_+ 13–67 2534.00 1.11 5.23 100.0 MT-TE-201 Mt tRNA GM12878 (Cell line)
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 4.00 40.00 0.01 100.0 MIR196A1-201 miRNA GM12878 (Cell line)
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 2.00 0.01 0.00 100.0 MT-RNR1-201 Mt rRNA GM12878 (Cell line)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 5686.00 18.49 11.74 100.0 MT-RNR1-201 Mt rRNA GM12878 (Cell line)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 3213.00 71.90 6.64 100.0 MIR454-201 miRNA GM12878 (Cell line)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 2617.00 62.04 5.41 100.0 MIR501-201 miRNA GM12878 (Cell line)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 20943.00 80.44 43.26 100.0 MIR769-201 miRNA GM12878 (Cell line)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 4286.00 75.29 8.85 100.0 KRTAP19-1-201 protein coding GM12878 (Cell line)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 4.00 100.00 0.01 100.0 MIR509-3-201 miRNA GM12878 (Cell line)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 3808.00 91.34 7.86 100.0 MIR301B-201 miRNA GM12878 (Cell line)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 1300.00 33.29 2.69 71.35 RNU1-82P-201 snRNA GM12878 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 263.00 2.47 0.54 100.0 SNORD66-201 snoRNA GM12878 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 1468.00 13.80 3.03 100.0 SNORD66-201 snoRNA GM12878 (Cell line)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 1461.00 13.73 3.02 100.0 SNORD66-201 snoRNA GM12878 (Cell line)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 1684.00 15.83 3.48 73.57 SNORD66-201 snoRNA GM12878 (Cell line)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 1237.00 70.52 2.55 100.0 U3.17-201 snoRNA GM12878 (Cell line)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 2458.00 72.17 5.08 100.0 SNORD17-201 snoRNA GM12878 (Cell line)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 1565.00 20.20 3.23 100.0 SNORD72-201 snoRNA GM12878 (Cell line)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 1191.00 57.18 2.46 100.0 SNORD70B-201 snoRNA GM12878 (Cell line)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 35453.00 61.03 73.22 89.02 RNY4P18-201 misc RNA GM12878 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 2772.00 23.30 5.73 100.0 SNORD90-201 snoRNA GM12878 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 7437.00 62.50 15.36 91.48 SNORD90-201 snoRNA GM12878 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 408.00 0.28 0.84 100.0 SNORD69-201 snoRNA GM12878 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 4654.00 3.19 9.61 100.0 SNORD69-201 snoRNA GM12878 (Cell line)