ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385048.3 ENST00000385048.3_16_37_+ 16–37 878.00 88.06 1.81 100.0 MIR150-201 miRNA GM12878 (Cell line)
ENST00000385050.3 ENST00000385050.3_53_74_+ 53–74 33.00 42.86 0.07 100.0 MIR542-201 miRNA GM12878 (Cell line)
ENST00000385051.1 ENST00000385051.1_51_71_+ 51–71 405.00 4.31 0.84 100.0 MIR500A-201 miRNA GM12878 (Cell line)
ENST00000385051.1 ENST00000385051.1_52_74_+ 52–74 6253.00 66.58 12.91 100.0 MIR500A-201 miRNA GM12878 (Cell line)
ENST00000385092.1 ENST00000385092.1_6_25_+ 6–25 5.00 0.44 0.01 71.43 MIR30A-201 miRNA GM12878 (Cell line)
ENST00000385092.1 ENST00000385092.1_47_68_+ 47–68 936.00 82.11 1.93 100.0 MIR30A-201 miRNA GM12878 (Cell line)
ENST00000385092.1 ENST00000385092.1_6_21_+ 6–21 1.00 0.09 0.00 100.0 MIR30A-201 miRNA GM12878 (Cell line)
ENST00000385092.1 ENST00000385092.1_6_29_+ 6–29 164.00 14.39 0.34 98.8 MIR30A-201 miRNA GM12878 (Cell line)
ENST00000385129.3 ENST00000385129.3_61_80_+ 61–80 347715.00 90.17 718.17 91.55 MIR27B-201 miRNA GM12878 (Cell line)
ENST00000385129.3 ENST00000385129.3_19_40_+ 19–40 1956.00 0.51 4.04 100.0 MIR27B-201 miRNA GM12878 (Cell line)
ENST00000385189.3 ENST00000385189.3_25_47_+ 25–47 10.00 100.00 0.02 100.0 MIR196A2-201 miRNA GM12878 (Cell line)
ENST00000385196.1 ENST00000385196.1_15_36_+ 15–36 221.00 73.91 0.46 100.0 MIR577-201 miRNA GM12878 (Cell line)
ENST00000385199.1 ENST00000385199.1_51_70_+ 51–70 3.00 100.00 0.01 100.0 MIR654-201 miRNA GM12878 (Cell line)
ENST00000385200.3 ENST00000385200.3_33_54_+ 33–54 1.00 100.00 0.00 100.0 MIR204-201 miRNA GM12878 (Cell line)
ENST00000385212.3 ENST00000385212.3_54_76_+ 54–76 1180.00 76.23 2.44 100.0 MIR152-201 miRNA GM12878 (Cell line)
ENST00000385219.1 ENST00000385219.1_23_45_+ 23–45 1173.00 76.02 2.42 100.0 MIR138-1-201 miRNA GM12878 (Cell line)
ENST00000385227.1 ENST00000385227.1_17_40_+ 17–40 37012.00 88.03 76.44 100.0 MIR30C1-201 miRNA GM12878 (Cell line)
ENST00000385235.3 ENST00000385235.3_16_37_+ 16–37 1634.00 78.98 3.37 100.0 MIR660-201 miRNA GM12878 (Cell line)
ENST00000385236.1 ENST00000385236.1_55_76_+ 55–76 2.00 0.20 0.00 100.0 MIR125B1-201 miRNA GM12878 (Cell line)
ENST00000385236.1 ENST00000385236.1_15_37_+ 15–37 727.00 72.55 1.50 86.04 MIR125B1-201 miRNA GM12878 (Cell line)
ENST00000385254.3 ENST00000385254.3_16_37_+ 16–37 1.00 100.00 0.00 100.0 MIR493-201 miRNA GM12878 (Cell line)
ENST00000385255.3 ENST00000385255.3_23_44_+ 23–44 2947.93 14.39 6.09 20.57 MIR182-201 miRNA GM12878 (Cell line)
ENST00000385255.3 ENST00000385255.3_23_46_+ 23–46 12728.12 62.14 26.29 65.96 MIR182-201 miRNA GM12878 (Cell line)
ENST00000385259.1 ENST00000385259.1_13_34_+ 13–34 25.00 62.50 0.05 89.29 MIR100-201 miRNA GM12878 (Cell line)
ENST00000385261.1 ENST00000385261.1_51_73_+ 51–73 8310.00 88.73 17.16 100.0 MIR301A-201 miRNA GM12878 (Cell line)