ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 4606.00 0.63 11.69 72.81 RNA5SP145-201 rRNA pseudogene K562 (Cell line)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 27.00 11.79 0.07 100.0 Y_RNA.105-201 misc RNA K562 (Cell line)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 310.00 3.37 0.79 100.0 RNY4P9-201 misc RNA K562 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_69_+ 1–69 409.00 2.58 1.04 100.0 RNU5B-1-201 snRNA K562 (Cell line)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 184.00 1.16 0.47 100.0 RNU5B-1-201 snRNA K562 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 3021.00 19.09 7.67 100.0 RNU5B-1-201 snRNA K562 (Cell line)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 1769.00 11.18 4.49 100.0 RNU5B-1-201 snRNA K562 (Cell line)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 680.00 4.30 1.73 100.0 RNU5B-1-201 snRNA K562 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_78_+ 1–78 620.00 3.92 1.57 66.38 RNU5B-1-201 snRNA K562 (Cell line)
ENST00000363293.1 ENST00000363293.1_2_82_+ 2–82 1.00 100.00 0.00 100.0 SNORD115-18-201 snoRNA K562 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 301.00 2.13 0.76 80.48 RNY4P27-201 misc RNA K562 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 1303.00 9.24 3.31 94.69 RNY4P27-201 misc RNA K562 (Cell line)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 480.00 10.18 1.22 100.0 Y_RNA.136-201 misc RNA K562 (Cell line)
ENST00000363742.1 ENST00000363742.1_4_67_+ 4–67 103.00 43.28 0.26 60.95 SNORD114-25-201 snoRNA K562 (Cell line)
ENST00000363762.1 ENST00000363762.1_3_72_+ 3–72 345.00 84.77 0.88 100.0 SNORD113-7-201 snoRNA K562 (Cell line)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 304.00 17.57 0.77 100.0 Y_RNA.181-201 misc RNA K562 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 1402.82 10.45 3.56 53.6 RNY1-201 misc RNA K562 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 88.00 0.66 0.22 100.0 RNY1-201 misc RNA K562 (Cell line)
ENST00000364228.1 ENST00000364228.1_24_109_+ 24–109 101.00 0.75 0.26 100.0 RNY1-201 misc RNA K562 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_39_+ 1–39 149.00 1.11 0.38 100.0 RNY1-201 misc RNA K562 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_32_+ 1–32 1355.69 10.10 3.44 43.75 RNY1-201 misc RNA K562 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_95_+ 71–95 23087.00 3.55 58.59 100.0 RNA5SP202-201 rRNA pseudogene K562 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_119_+ 71–119 3305.00 0.51 8.39 100.0 RNA5SP202-201 rRNA pseudogene K562 (Cell line)
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 6233.00 0.96 15.82 100.0 RNA5SP202-201 rRNA pseudogene K562 (Cell line)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 12119.71 1.86 30.76 34.06 RNA5SP202-201 rRNA pseudogene K562 (Cell line)