ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 6953.00 0.94 17.65 38.7 RNA5SP370-201 rRNA pseudogene K562 (Cell line)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 1507.00 47.02 3.82 100.0 SNORA31-201 snoRNA K562 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 95840.00 12.96 243.23 100.0 RNA5SP389-201 rRNA pseudogene K562 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 180710.00 24.43 458.62 95.05 RNA5SP389-201 rRNA pseudogene K562 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 36361.00 4.92 92.28 62.73 RNA5SP389-201 rRNA pseudogene K562 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 24203.00 3.27 61.42 100.0 RNA5SP389-201 rRNA pseudogene K562 (Cell line)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 4607.00 5.92 11.69 78.15 RNU5A-1-201 snRNA K562 (Cell line)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 10799.00 13.87 27.41 77.06 RNU5A-1-201 snRNA K562 (Cell line)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 5331.64 6.85 13.53 45.95 RNU5A-1-201 snRNA K562 (Cell line)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 5492.00 7.05 13.94 83.4 RNU5A-1-201 snRNA K562 (Cell line)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 3489.00 4.48 8.85 66.44 RNU5A-1-201 snRNA K562 (Cell line)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 476.00 0.61 1.21 100.0 RNU5A-1-201 snRNA K562 (Cell line)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 4771.00 6.13 12.11 75.32 RNU5A-1-201 snRNA K562 (Cell line)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 3921.00 5.04 9.95 44.65 RNU5A-1-201 snRNA K562 (Cell line)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 811.78 1.04 2.06 35.7 RNU5A-1-201 snRNA K562 (Cell line)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 2604.00 3.34 6.61 53.91 RNU5A-1-201 snRNA K562 (Cell line)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 483.00 0.62 1.23 100.0 RNU5A-1-201 snRNA K562 (Cell line)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 7164.70 9.20 18.18 66.59 RNU5A-1-201 snRNA K562 (Cell line)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 1946.00 2.50 4.94 100.0 RNU5A-1-201 snRNA K562 (Cell line)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 1312.25 1.69 3.33 40.06 RNU5A-1-201 snRNA K562 (Cell line)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 2444.00 3.14 6.20 43.43 RNU5A-1-201 snRNA K562 (Cell line)
ENST00000362723.1 ENST00000362723.1_3_71_+ 3–71 4.00 50.00 0.01 100.0 SNORD114-14-201 snoRNA K562 (Cell line)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 46.00 1.96 0.12 100.0 SNORD104-201 snoRNA K562 (Cell line)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 19.00 0.81 0.05 100.0 SNORD104-201 snoRNA K562 (Cell line)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 36758.00 37.40 93.29 73.61 RNA5SP358-201 rRNA pseudogene K562 (Cell line)