ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000833535.1 ENST00000833535.1_763_828_+ 763–828 1366.00 11.89 3.47 100.0 TAF12-DT-204 lncRNA K562 (Cell line)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 213473.00 86.49 541.77 99.89 ZFAS1-238 lncRNA K562 (Cell line)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 464.00 0.19 1.18 100.0 ZFAS1-238 lncRNA K562 (Cell line)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 819.00 0.33 2.08 100.0 ZFAS1-238 lncRNA K562 (Cell line)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 2772.00 1.12 7.04 100.0 ZFAS1-238 lncRNA K562 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 1136.00 3.84 2.88 100.0 ZFAS1-242 lncRNA K562 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 26473.00 89.59 67.19 100.0 ZFAS1-242 lncRNA K562 (Cell line)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 5057.00 37.23 12.83 100.0 ENST00000837997 lncRNA K562 (Cell line)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 3430.00 25.25 8.70 100.0 ENST00000837997 lncRNA K562 (Cell line)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 4586.00 64.43 11.64 76.48 ENST00000839036 lncRNA K562 (Cell line)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 3624.00 29.67 9.20 100.0 ENST00000849527 lncRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 3636.00 3.71 9.23 90.97 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 19471.00 19.87 49.42 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 623.00 0.47 1.58 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 17702.00 68.58 44.93 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 48.00 0.19 0.12 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 269.00 4.41 0.68 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 3443.00 3.74 8.74 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 349.00 3.98 0.89 76.87 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 3911.00 2.98 9.93 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR1-159141611 tRNA-transcript-chr1-159141611_3_20_+ 3–20 15.00 3.39 0.04 100.0 TRNA-TRANSCRIPT-CHR1-159141611 Arg tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 1838.00 5.10 4.66 94.06 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_32_53_+ 32–53 330.00 0.92 0.84 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 1694.00 4.70 4.30 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR1-161448951 tRNA-transcript-chr1-161448951_1_26_+ 1–26 16643.00 39.41 42.24 100.0 TRNA-TRANSCRIPT-CHR1-161448951 Leu tRNA K562 (Cell line)