ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 138.00 0.04 0.35 100.0 SNHG5-273 lncRNA K562 (Cell line)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 27713.00 8.16 70.33 100.0 SNHG5-273 lncRNA K562 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 298.00 0.09 0.76 100.0 SNHG5-273 lncRNA K562 (Cell line)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 1.00 0.00 0.00 100.0 SNHG5-273 lncRNA K562 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 136330.00 40.16 345.99 90.64 SNHG5-273 lncRNA K562 (Cell line)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 1.00 0.17 0.00 100.0 MEG8-251 lncRNA K562 (Cell line)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 247.00 41.51 0.63 54.65 MEG8-251 lncRNA K562 (Cell line)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 7.00 1.18 0.02 46.67 MEG8-251 lncRNA K562 (Cell line)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 1.00 0.17 0.00 100.0 MEG8-251 lncRNA K562 (Cell line)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 4.00 40.00 0.01 100.0 SNHG14-336 lncRNA K562 (Cell line)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 2.00 22.22 0.01 66.67 SNHG14-341 lncRNA K562 (Cell line)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 6215.00 77.99 15.77 100.0 FMN2-209 protein coding CDS not defined K562 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 2268.00 0.81 5.76 100.0 LINC02739-203 lncRNA K562 (Cell line)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 34175.00 12.17 86.73 100.0 LINC02739-203 lncRNA K562 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 1859.00 0.66 4.72 15.13 LINC02739-203 lncRNA K562 (Cell line)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 20.00 0.01 0.05 100.0 LINC02739-203 lncRNA K562 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 10425.00 3.71 26.46 84.87 LINC02739-203 lncRNA K562 (Cell line)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 142228.00 50.65 360.96 100.0 LINC02739-203 lncRNA K562 (Cell line)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 1.00 4.55 0.00 100.0 MIR124-1HG-216 lncRNA K562 (Cell line)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 163.00 21.85 0.41 100.0 SNHG10-212 lncRNA K562 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 91325.92 87.56 231.78 96.16 SNHG19-202 lncRNA K562 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 3726.73 3.57 9.46 9.78 SNHG19-202 lncRNA K562 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 2.80 0.00 0.01 55.94 SNHG19-202 lncRNA K562 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 3.60 0.00 0.01 72.05 SNHG19-202 lncRNA K562 (Cell line)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 3356.00 51.83 8.52 100.0 MIR222HG-206 lncRNA K562 (Cell line)