ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000666663.1 ENST00000666663.1_42_82_+ 42–82 1.00 5.26 0.00 100.0 SNHG14-306 lncRNA K562 (Cell line)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 3193.00 5.94 8.10 100.0 ENST00000666735 lncRNA K562 (Cell line)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 8492.00 15.79 21.55 100.0 ENST00000666735 lncRNA K562 (Cell line)
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 9.00 14.52 0.02 100.0 MEG8-242 lncRNA K562 (Cell line)
ENST00000667788.1 ENST00000667788.1_16_92_+ 16–92 1.00 6.67 0.00 100.0 SNHG14-312 lncRNA K562 (Cell line)
ENST00000667814.1 ENST00000667814.1_36_68_+ 36–68 1.00 0.37 0.00 100.0 MEG8-244 lncRNA K562 (Cell line)
ENST00000667814.1 ENST00000667814.1_2_32_+ 2–32 6.00 2.25 0.02 100.0 MEG8-244 lncRNA K562 (Cell line)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 123.00 46.07 0.31 67.96 MEG8-244 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 7162.00 0.54 18.18 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 3.00 0.00 0.01 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 27808.00 2.11 70.57 95.2 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 47.99 0.00 0.12 61.52 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 1176.00 0.09 2.98 87.96 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 254709.00 19.35 646.42 96.68 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 177.00 0.01 0.45 43.6 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 150354.00 11.42 381.58 99.82 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 12824.00 0.97 32.55 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 197374.00 14.99 500.91 97.08 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 45.00 0.00 0.11 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 1497.00 0.11 3.80 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 4457.00 0.34 11.31 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 397.00 0.03 1.01 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 54.00 0.00 0.14 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 45.00 0.00 0.11 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 140233.00 10.65 355.90 100.0 SNHG1-248 lncRNA K562 (Cell line)