ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 100933.00 85.75 256.16 93.64 ENST00000655317 lncRNA K562 (Cell line)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 1126.00 0.96 2.86 100.0 ENST00000655317 lncRNA K562 (Cell line)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 8519.00 7.24 21.62 7.74 ENST00000655317 lncRNA K562 (Cell line)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 146.00 0.12 0.37 100.0 ENST00000655317 lncRNA K562 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 1093.00 2.78 2.77 79.32 LINC01962-202 lncRNA K562 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 5650.00 14.36 14.34 100.0 LINC01962-202 lncRNA K562 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 5314.00 13.51 13.49 100.0 LINC01962-202 lncRNA K562 (Cell line)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 2.00 6.90 0.01 100.0 SNHG14-241 lncRNA K562 (Cell line)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 63.00 76.83 0.16 100.0 MEG8-228 lncRNA K562 (Cell line)
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 1.00 3.45 0.00 100.0 SNHG14-254 lncRNA K562 (Cell line)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 77.00 0.06 0.20 100.0 LIMD1-AS1-204 lncRNA K562 (Cell line)
ENST00000658801.2 ENST00000658801.2_139_214_+ 139–214 2454.00 2.00 6.23 100.0 LIMD1-AS1-204 lncRNA K562 (Cell line)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 34963.00 28.54 88.73 88.17 LIMD1-AS1-204 lncRNA K562 (Cell line)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 8.00 5.13 0.02 100.0 MIR99AHG-262 lncRNA K562 (Cell line)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 107.00 68.59 0.27 100.0 MIR99AHG-262 lncRNA K562 (Cell line)
ENST00000661688.1 ENST00000661688.1_965_986_+ 965–986 26.00 1.49 0.07 100.0 MIR9-2HG-225 lncRNA K562 (Cell line)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 1490.00 85.39 3.78 96.19 MIR9-2HG-225 lncRNA K562 (Cell line)
ENST00000661815.1 ENST00000661815.1_36_69_+ 36–69 1.00 4.17 0.00 100.0 MEG8-233 lncRNA K562 (Cell line)
ENST00000661889.1 ENST00000661889.1_1145_1233_+ 1145–1233 1.00 2.50 0.00 100.0 SNHG14-278 lncRNA K562 (Cell line)
ENST00000661889.1 ENST00000661889.1_2_92_+ 2–92 6.00 15.00 0.02 100.0 SNHG14-278 lncRNA K562 (Cell line)
ENST00000662228.1 ENST00000662228.1_1205_1272_+ 1205–1272 14.00 21.21 0.04 100.0 MEG8-234 lncRNA K562 (Cell line)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 7384.00 91.88 18.74 100.0 SNHG17-252 lncRNA K562 (Cell line)
ENST00000663945.1 ENST00000663945.1_2_92_+ 2–92 13.00 50.00 0.03 100.0 SNHG14-288 lncRNA K562 (Cell line)
ENST00000665787.1 ENST00000665787.1_2059_2127_+ 2059–2127 14.00 31.82 0.04 100.0 MEG8-240 lncRNA K562 (Cell line)
ENST00000666022.1 ENST00000666022.1_1_88_+ 1–88 2.00 6.67 0.01 100.0 SNHG14-303 lncRNA K562 (Cell line)