ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 268.00 1.51 0.68 43.09 RNA5-8SN2-201 rRNA K562 (Cell line)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 16.32 0.09 0.04 36.27 RNA5-8SN2-201 rRNA K562 (Cell line)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 6298.00 94.11 15.98 100.0 MIR7974-201 miRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 10398.00 1.50 26.39 100.0 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 4728.34 0.68 12.00 41.24 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 282922.00 40.77 718.03 99.07 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 50.00 0.01 0.13 100.0 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 49259.00 7.10 125.01 78.58 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 33520.00 4.83 85.07 68.52 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 9134.00 1.32 23.18 63.63 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 7128.21 1.03 18.09 62.17 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 136643.00 19.69 346.79 100.0 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 361.00 0.05 0.92 100.0 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_75_+ 1–75 761.00 0.11 1.93 100.0 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 1075.00 0.15 2.73 100.0 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 15958.32 2.30 40.50 57.17 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 8900.88 1.28 22.59 45.89 U2.3-201 snRNA K562 (Cell line)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 1605.00 0.33 4.07 100.0 U2.6-201 snRNA K562 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 7.00 0.85 0.02 87.5 ENST00000619323 lncRNA K562 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 601.00 73.29 1.53 99.5 ENST00000619323 lncRNA K562 (Cell line)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 482.00 14.84 1.22 100.0 SCARNA4-202 scaRNA K562 (Cell line)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 228.00 8.43 0.58 100.0 ENST00000625572 miRNA K562 (Cell line)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 649.00 17.51 1.65 100.0 ENST00000628177 snoRNA K562 (Cell line)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 168777.00 90.49 428.34 100.0 ENST00000630615 snoRNA K562 (Cell line)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 7902.00 53.63 20.05 100.0 DMRT2-209 protein coding K562 (Cell line)