ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 241.00 22.61 0.61 100.0 RPS11-206 retained intron K562 (Cell line)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 303.00 28.42 0.77 100.0 RPS11-206 retained intron K562 (Cell line)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 117.00 48.35 0.30 53.18 CARMN-209 lncRNA K562 (Cell line)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 2712.00 28.86 6.88 100.0 ENST00000602478 lncRNA K562 (Cell line)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 6.00 4.92 0.02 100.0 PPFIA1P1-201 processed pseudogene K562 (Cell line)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 136.00 37.16 0.35 100.0 SNORD114-21-201 snoRNA K562 (Cell line)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 6.00 1.64 0.02 100.0 SNORD114-21-201 snoRNA K562 (Cell line)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 140.00 90.32 0.36 100.0 MIR98-201 miRNA K562 (Cell line)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 170.00 71.13 0.43 100.0 SNORD113-5-201 snoRNA K562 (Cell line)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 2795.00 92.37 7.09 100.0 MIR15A-201 miRNA K562 (Cell line)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 22.00 81.48 0.06 100.0 MIR376C-201 miRNA K562 (Cell line)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 748.00 34.73 1.90 100.0 SNHG21-206 retained intron K562 (Cell line)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 407.00 55.68 1.03 100.0 SNORD11B-201 snoRNA K562 (Cell line)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 456.00 44.27 1.16 100.0 SNORD91B-201 snoRNA K562 (Cell line)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 15299.00 76.10 38.83 95.38 SNORD91A-201 snoRNA K562 (Cell line)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 334983.00 44.86 850.15 95.35 MIR486-1-201 miRNA K562 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 420.00 1.18 1.07 15.71 NOP56-219 retained intron K562 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 2262.00 6.35 5.74 100.0 NOP56-219 retained intron K562 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 10265.00 28.81 26.05 100.0 NOP56-219 retained intron K562 (Cell line)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 15192.00 42.63 38.56 99.32 NOP56-219 retained intron K562 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 354.00 1.99 0.90 63.55 RNA5-8SN2-201 rRNA K562 (Cell line)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 26.27 0.15 0.07 58.37 RNA5-8SN2-201 rRNA K562 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 99.00 0.56 0.25 100.0 RNA5-8SN2-201 rRNA K562 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 273.00 1.54 0.69 100.0 RNA5-8SN2-201 rRNA K562 (Cell line)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 3609.00 20.31 9.16 100.0 RNA5-8SN2-201 rRNA K562 (Cell line)