ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 7668.00 2.44 19.46 95.15 RPL13A-212 retained intron K562 (Cell line)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 113.00 0.04 0.29 100.0 RPL13A-212 retained intron K562 (Cell line)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 48.00 0.02 0.12 19.43 RPL13A-212 retained intron K562 (Cell line)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 281036.00 89.37 713.24 99.42 RPL13A-212 retained intron K562 (Cell line)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 17798.00 63.46 45.17 79.17 RPL7A-207 protein coding CDS not defined K562 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 1043.00 3.72 2.65 100.0 RPL7A-207 protein coding CDS not defined K562 (Cell line)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 1.00 0.00 0.00 100.0 RPL7A-207 protein coding CDS not defined K562 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 114.00 0.41 0.29 100.0 RPL7A-207 protein coding CDS not defined K562 (Cell line)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 28271.00 78.96 71.75 89.68 RN7SL2-201 misc RNA K562 (Cell line)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 41.00 0.11 0.10 100.0 RN7SL2-201 misc RNA K562 (Cell line)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 1.00 0.60 0.00 100.0 RGS11-208 retained intron K562 (Cell line)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 9583.00 83.15 24.32 99.56 NOP56-217 protein coding CDS not defined K562 (Cell line)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 180.00 1.56 0.46 100.0 NOP56-217 protein coding CDS not defined K562 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 158.00 0.06 0.40 100.0 RABGGTB-213 protein coding CDS not defined K562 (Cell line)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 2.00 0.00 0.01 100.0 RABGGTB-213 protein coding CDS not defined K562 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 16.00 0.01 0.04 18.82 RABGGTB-213 protein coding CDS not defined K562 (Cell line)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 4750.00 1.87 12.05 100.0 RABGGTB-213 protein coding CDS not defined K562 (Cell line)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 3999.00 1.57 10.15 100.0 RABGGTB-213 protein coding CDS not defined K562 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 69.00 0.03 0.18 81.18 RABGGTB-213 protein coding CDS not defined K562 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 214466.00 84.31 544.29 99.29 RABGGTB-213 protein coding CDS not defined K562 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 853.00 0.34 2.16 56.9 RABGGTB-213 protein coding CDS not defined K562 (Cell line)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 246.00 3.77 0.62 100.0 GNL3-211 retained intron K562 (Cell line)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 5143.00 78.90 13.05 100.0 GNL3-211 retained intron K562 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 1201.00 49.10 3.05 100.0 RPL5-205 retained intron K562 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 691.00 28.25 1.75 100.0 RPL5-205 retained intron K562 (Cell line)