ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 4609.00 0.81 8.57 100.0 RNA5SP202-201 rRNA pseudogene K562 (Cell line)
ENST00000364315.1 ENST00000364315.1_52_119_+ 52–119 5390.00 0.94 10.02 100.0 RNA5SP202-201 rRNA pseudogene K562 (Cell line)
ENST00000364315.1 ENST00000364315.1_37_95_+ 37–95 49124.16 8.60 91.32 42.77 RNA5SP202-201 rRNA pseudogene K562 (Cell line)
ENST00000364315.1 ENST00000364315.1_87_119_+ 87–119 2773.00 0.49 5.15 100.0 RNA5SP202-201 rRNA pseudogene K562 (Cell line)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 5725.05 1.00 10.64 35.2 RNA5SP202-201 rRNA pseudogene K562 (Cell line)
ENST00000364370.1 ENST00000364370.1_35_67_+ 35–67 31.00 11.65 0.06 100.0 SNORD114-9-201 snoRNA K562 (Cell line)
ENST00000364370.1 ENST00000364370.1_4_67_+ 4–67 61.00 22.93 0.11 100.0 SNORD114-9-201 snoRNA K562 (Cell line)
ENST00000364409.1 ENST00000364409.1_68_90_+ 68–90 18566.00 74.67 34.51 100.0 Y_RNA.234-201 misc RNA K562 (Cell line)
ENST00000364451.1 ENST00000364451.1_1_95_+ 1–95 276.00 0.06 0.51 100.0 RNA5S9-201 rRNA K562 (Cell line)
ENST00000364543.1 ENST00000364543.1_1_39_+ 1–39 11630.00 4.22 21.62 100.0 RNA5SP141-201 rRNA pseudogene K562 (Cell line)
ENST00000364687.1 ENST00000364687.1_34_67_+ 34–67 6.00 18.75 0.01 100.0 SNORD114-15-201 snoRNA K562 (Cell line)
ENST00000364722.1 ENST00000364722.1_2_30_+ 2–30 3691.00 81.34 6.86 100.0 ENST00000364722 snoRNA K562 (Cell line)
ENST00000364884.1 ENST00000364884.1_1_66_+ 1–66 27503.00 62.72 51.13 100.0 SNORD52-201 snoRNA K562 (Cell line)
ENST00000364915.1 ENST00000364915.1_2_74_+ 2–74 5920.00 50.46 11.00 66.17 SNORD117-201 snoRNA K562 (Cell line)
ENST00000364915.1 ENST00000364915.1_1_76_+ 1–76 3026.00 25.79 5.63 34.39 SNORD117-201 snoRNA K562 (Cell line)
ENST00000364969.1 ENST00000364969.1_3_71_+ 3–71 139.00 53.26 0.26 62.33 SNORD114-3-201 snoRNA K562 (Cell line)
ENST00000364969.1 ENST00000364969.1_4_62_+ 4–62 23.00 8.81 0.04 100.0 SNORD114-3-201 snoRNA K562 (Cell line)
ENST00000364969.1 ENST00000364969.1_38_71_+ 38–71 3.00 1.15 0.01 100.0 SNORD114-3-201 snoRNA K562 (Cell line)
ENST00000364991.1 ENST00000364991.1_17_30_+ 17–30 858.00 1.99 1.59 100.0 RNA5SP298-201 rRNA pseudogene K562 (Cell line)
ENST00000365080.1 ENST00000365080.1_3_67_+ 3–67 32.00 72.73 0.06 100.0 SNORD113-9-201 snoRNA K562 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_38_+ 1–38 5828.00 14.85 10.83 100.0 SNORD38A-201 snoRNA K562 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_41_+ 1–41 1378.00 3.51 2.56 100.0 SNORD38A-201 snoRNA K562 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_68_+ 1–68 29363.00 74.80 54.58 100.0 SNORD38A-201 snoRNA K562 (Cell line)
ENST00000365178.1 ENST00000365178.1_4_67_+ 4–67 61.00 51.69 0.11 93.85 SNORD114-20-201 snoRNA K562 (Cell line)
ENST00000365328.1 ENST00000365328.1_277_331_+ 277–331 1930.00 9.43 3.59 83.19 7SK.1-201 misc RNA K562 (Cell line)