ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 635.00 18.89 1.18 100.0 ENST00000625572 miRNA K562 (Cell line)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 3446.00 57.04 6.41 100.0 ENST00000628177 snoRNA K562 (Cell line)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 121727.00 92.70 226.28 100.0 ENST00000630615 snoRNA K562 (Cell line)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 2613.00 53.55 4.86 100.0 DMRT2-209 protein coding K562 (Cell line)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 323.00 6.62 0.60 100.0 DMRT2-209 protein coding K562 (Cell line)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 532.00 20.74 0.99 100.0 SNORD98-201 snoRNA K562 (Cell line)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 1125.00 43.86 2.09 100.0 SNORD98-201 snoRNA K562 (Cell line)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 1115980.84 55.53 2074.55 59.29 MIR106AHG-201 lncRNA K562 (Cell line)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 26.00 0.00 0.05 100.0 MIR106AHG-201 lncRNA K562 (Cell line)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 0.85 0.00 0.00 85.2 MIR106AHG-201 lncRNA K562 (Cell line)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 2.00 5.71 0.00 100.0 MEG8-222 lncRNA K562 (Cell line)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 11.00 31.43 0.02 100.0 MEG8-222 lncRNA K562 (Cell line)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 13.00 6.67 0.02 100.0 SNHG14-224 lncRNA K562 (Cell line)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 15.00 7.69 0.03 100.0 SNHG14-224 lncRNA K562 (Cell line)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 1.00 0.51 0.00 100.0 SNHG14-224 lncRNA K562 (Cell line)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 4.00 2.05 0.01 80.0 SNHG14-224 lncRNA K562 (Cell line)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 1.00 0.51 0.00 100.0 SNHG14-224 lncRNA K562 (Cell line)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 4.00 2.05 0.01 57.14 SNHG14-224 lncRNA K562 (Cell line)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 7.00 3.59 0.01 87.5 SNHG14-224 lncRNA K562 (Cell line)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 10210.25 26.15 18.98 73.57 5S_rRNA.20-201 rRNA pseudogene K562 (Cell line)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 6874.00 18.77 12.78 100.0 HSPA9-211 retained intron K562 (Cell line)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 12137.00 33.14 22.56 94.25 HSPA9-211 retained intron K562 (Cell line)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 260.00 91.23 0.48 100.0 DNM3OS-205 lncRNA K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 164.00 0.02 0.30 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 9322.00 0.88 17.33 100.0 GAS5-230 retained intron K562 (Cell line)