ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 172.00 0.46 0.32 100.0 RNA5-8SN2-201 rRNA K562 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 599.00 1.61 1.11 100.0 RNA5-8SN2-201 rRNA K562 (Cell line)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 5236.00 14.03 9.73 100.0 RNA5-8SN2-201 rRNA K562 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 1885.00 5.05 3.50 37.48 RNA5-8SN2-201 rRNA K562 (Cell line)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 46.38 0.12 0.09 39.31 RNA5-8SN2-201 rRNA K562 (Cell line)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 3487.00 94.04 6.48 100.0 MIR7974-201 miRNA K562 (Cell line)
ENST00000616574.2 ENST00000616574.2_44_64_+ 44–64 4.00 80.00 0.01 100.0 MIR376A1-201 miRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 6515.00 1.46 12.11 100.0 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 2549.60 0.57 4.74 39.65 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 244304.00 54.66 454.15 99.54 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 20.00 0.00 0.04 100.0 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 22787.00 5.10 42.36 81.33 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 31194.00 6.98 57.99 85.58 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 4299.00 0.96 7.99 54.6 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 4176.48 0.93 7.76 64.95 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 48988.00 10.96 91.07 100.0 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 115.00 0.03 0.21 100.0 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_75_+ 1–75 468.00 0.10 0.87 100.0 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 521.00 0.12 0.97 100.0 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 6962.59 1.56 12.94 57.95 U2.3-201 snRNA K562 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 3867.45 0.87 7.19 45.47 U2.3-201 snRNA K562 (Cell line)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 917.00 0.26 1.70 100.0 U2.6-201 snRNA K562 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 8.00 1.16 0.01 88.89 ENST00000619323 lncRNA K562 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 544.00 78.96 1.01 99.63 ENST00000619323 lncRNA K562 (Cell line)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 303.00 16.11 0.56 100.0 SCARNA4-202 scaRNA K562 (Cell line)