ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387459.1 ENST00000387459.1_13_67_+ 13–67 1.00 0.00 0.00 100.0 MT-TE-201 Mt tRNA K562 (Cell line)
ENST00000387459.1 ENST00000387459.1_39_69_+ 39–69 3.00 0.00 0.01 75.0 MT-TE-201 Mt tRNA K562 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 161708.00 70.09 300.61 89.7 MT-TE-201 Mt tRNA K562 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_57_+ 1–57 23609.00 10.23 43.89 100.0 MT-TE-201 Mt tRNA K562 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_62_+ 1–62 3617.00 1.57 6.72 81.98 MT-TE-201 Mt tRNA K562 (Cell line)
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 331.00 66.33 0.62 100.0 MIR196A1-201 miRNA K562 (Cell line)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 1894.00 3.08 3.52 100.0 MT-RNR1-201 Mt rRNA K562 (Cell line)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 693.00 55.44 1.29 100.0 MIR454-201 miRNA K562 (Cell line)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 131.00 33.16 0.24 100.0 MIR501-201 miRNA K562 (Cell line)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 7836.00 79.28 14.57 100.0 MIR769-201 miRNA K562 (Cell line)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 1398.00 69.93 2.60 100.0 KRTAP19-1-201 protein coding K562 (Cell line)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 1.00 25.00 0.00 100.0 MIR708-201 miRNA K562 (Cell line)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 8.00 61.54 0.01 100.0 MIR509-3-201 miRNA K562 (Cell line)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 10662.00 93.17 19.82 100.0 MIR301B-201 miRNA K562 (Cell line)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 4108.00 54.82 7.64 77.69 RNU1-82P-201 snRNA K562 (Cell line)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 825.00 19.79 1.53 100.0 SNORD66-201 snoRNA K562 (Cell line)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 615.00 14.75 1.14 67.73 SNORD66-201 snoRNA K562 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 62.00 1.49 0.12 100.0 SNORD66-201 snoRNA K562 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 345.00 8.28 0.64 100.0 SNORD66-201 snoRNA K562 (Cell line)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 476.00 66.39 0.88 100.0 U3.17-201 snoRNA K562 (Cell line)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 1044.00 50.68 1.94 100.0 SNORD17-201 snoRNA K562 (Cell line)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 1105.00 14.20 2.05 100.0 SNORD72-201 snoRNA K562 (Cell line)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 2507.00 72.00 4.66 100.0 SNORD70B-201 snoRNA K562 (Cell line)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 2254.00 17.17 4.19 85.87 RNY4P18-201 misc RNA K562 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 3043.00 42.15 5.66 78.13 SNORD90-201 snoRNA K562 (Cell line)