ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 2158.00 3.15 5.57 86.39 RNA5SP389-201 rRNA pseudogene GM12878 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 6134.00 8.95 15.82 100.0 RNA5SP389-201 rRNA pseudogene GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 151.01 0.93 0.39 38.23 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 1486.00 9.12 3.83 77.64 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 283.00 1.74 0.73 43.67 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 1553.69 9.54 4.01 41.2 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 332.00 2.04 0.86 87.37 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 668.00 4.10 1.72 75.48 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 135.00 0.83 0.35 100.0 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 549.00 3.37 1.42 74.9 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 576.00 3.54 1.49 42.38 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 57.87 0.36 0.15 25.05 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 489.00 3.00 1.26 55.89 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 108.00 0.66 0.28 100.0 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 549.00 3.37 1.42 100.0 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 2599.79 15.96 6.70 69.07 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 629.00 3.86 1.62 58.62 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 398.00 7.04 1.03 100.0 SNORD104-201 snoRNA GM12878 (Cell line)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 35.00 0.62 0.09 100.0 SNORD104-201 snoRNA GM12878 (Cell line)
ENST00000362912.1 ENST00000362912.1_2_82_+ 2–82 1.00 14.29 0.00 100.0 SNORD115-9-201 snoRNA GM12878 (Cell line)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 11033.00 14.48 28.45 79.65 RNA5SP358-201 rRNA pseudogene GM12878 (Cell line)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 1909.00 2.79 4.92 87.49 RNA5SP145-201 rRNA pseudogene GM12878 (Cell line)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 30.00 7.77 0.08 100.0 Y_RNA.105-201 misc RNA GM12878 (Cell line)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 14.00 0.04 0.04 100.0 RNY4P9-201 misc RNA GM12878 (Cell line)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 59.00 1.64 0.15 100.0 RNU5B-1-201 snRNA GM12878 (Cell line)