ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 300.00 23.94 0.77 100.0 SNORD11B-201 snoRNA GM12878 (Cell line)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 278.00 16.87 0.72 100.0 SNORD91B-201 snoRNA GM12878 (Cell line)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 9575.00 60.43 24.69 96.87 SNORD91A-201 snoRNA GM12878 (Cell line)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 4293.00 38.61 11.07 89.96 MIR486-1-201 miRNA GM12878 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 221.00 0.39 0.57 37.39 NOP56-219 retained intron GM12878 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 784.00 1.38 2.02 100.0 NOP56-219 retained intron GM12878 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 31899.00 56.18 82.26 100.0 NOP56-219 retained intron GM12878 (Cell line)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 14451.00 25.45 37.27 98.82 NOP56-219 retained intron GM12878 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 186.00 0.42 0.48 40.35 RNA5-8SN2-201 rRNA GM12878 (Cell line)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 124.77 0.28 0.32 55.95 RNA5-8SN2-201 rRNA GM12878 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 383.00 0.87 0.99 100.0 RNA5-8SN2-201 rRNA GM12878 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 2618.00 5.93 6.75 100.0 RNA5-8SN2-201 rRNA GM12878 (Cell line)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 5580.00 12.64 14.39 100.0 RNA5-8SN2-201 rRNA GM12878 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 402.00 0.91 1.04 68.37 RNA5-8SN2-201 rRNA GM12878 (Cell line)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 91.05 0.21 0.23 40.83 RNA5-8SN2-201 rRNA GM12878 (Cell line)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 14809.00 92.60 38.19 100.0 MIR7974-201 miRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 1587.00 0.73 4.09 100.0 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 1101.71 0.50 2.84 36.48 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 9752.00 4.46 25.15 92.91 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 9.00 0.00 0.02 100.0 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 75686.00 34.65 195.18 80.53 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 16096.00 7.37 41.51 58.01 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 11429.00 5.23 29.47 90.91 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 1987.31 0.91 5.13 65.81 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 14003.00 6.41 36.11 100.0 U2.3-201 snRNA GM12878 (Cell line)