ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 244.00 0.13 0.63 100.0 WDR74-204 protein coding GM12878 (Cell line)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 1124.00 22.28 2.90 100.0 HSPA8-211 retained intron GM12878 (Cell line)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 388.00 1.68 1.00 100.0 SCARNA9-201 lncRNA GM12878 (Cell line)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 51281.00 94.18 132.25 100.0 TAF1D-215 retained intron GM12878 (Cell line)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 70.00 0.13 0.18 100.0 TAF1D-215 retained intron GM12878 (Cell line)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 27.00 0.73 0.07 100.0 HSPA8-215 retained intron GM12878 (Cell line)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 262.00 7.07 0.68 100.0 HSPA8-215 retained intron GM12878 (Cell line)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 1185.00 31.98 3.06 100.0 HSPA8-215 retained intron GM12878 (Cell line)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 1330.00 37.61 3.43 100.0 RPS2-215 retained intron GM12878 (Cell line)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 39763.00 89.12 102.54 90.28 ENST00000548801 lncRNA GM12878 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 130.00 0.98 0.34 100.0 ENST00000554988 lncRNA GM12878 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 83.00 0.63 0.21 100.0 ENST00000554988 lncRNA GM12878 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 7788.00 58.92 20.08 100.0 ENST00000554988 lncRNA GM12878 (Cell line)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 91.00 3.05 0.23 100.0 SNHG14-220 retained intron GM12878 (Cell line)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 763.00 25.55 1.97 100.0 SNHG14-220 retained intron GM12878 (Cell line)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 17.00 0.57 0.04 100.0 SNHG14-220 retained intron GM12878 (Cell line)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 56.00 1.88 0.14 100.0 SNHG14-220 retained intron GM12878 (Cell line)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 31031.00 99.80 80.02 100.0 TEKT4P2-201 transcribed unprocessed pseudogene GM12878 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 1285.00 6.84 3.31 100.0 RPL4-202 retained intron GM12878 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 6.00 0.03 0.02 100.0 RPL4-202 retained intron GM12878 (Cell line)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 67.00 0.36 0.17 100.0 RPL4-202 retained intron GM12878 (Cell line)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 719.00 3.83 1.85 100.0 RPL4-202 retained intron GM12878 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 15210.00 80.95 39.22 99.28 RPL4-202 retained intron GM12878 (Cell line)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 176.00 0.22 0.45 100.0 ENST00000563103 lncRNA GM12878 (Cell line)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 34481.00 71.75 88.92 100.0 RPL4-207 retained intron GM12878 (Cell line)