ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 84.00 3.73 0.22 100.0 RNA5SP486-201 rRNA pseudogene GM12878 (Cell line)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 3584.00 88.34 9.24 100.0 SCARNA5-201 scaRNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 8648.00 1.79 22.30 89.94 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 7862.00 1.63 20.28 73.03 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 601.00 0.12 1.55 100.0 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 23197.00 4.80 59.82 100.0 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 1393.00 0.29 3.59 100.0 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 23576.00 4.88 60.80 100.0 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 1020.00 0.21 2.63 100.0 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 246011.00 50.91 634.43 98.83 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 34557.00 7.15 89.12 95.97 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 111.00 0.02 0.29 100.0 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 3974.00 0.82 10.25 64.5 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 36157.00 7.48 93.24 75.04 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 179664.00 78.72 463.33 90.75 MIR3142HG-201 lncRNA GM12878 (Cell line)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 76.00 19.44 0.20 100.0 SNHG6-204 retained intron GM12878 (Cell line)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 78277.00 39.76 201.87 81.93 MIR151A-201 miRNA GM12878 (Cell line)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 95688.00 48.60 246.77 100.0 MIR151A-201 miRNA GM12878 (Cell line)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 113067.00 99.21 291.58 100.0 DENND3-221 protein coding GM12878 (Cell line)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 244.00 0.13 0.63 100.0 WDR74-204 protein coding GM12878 (Cell line)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 2.00 0.00 0.01 100.0 WDR74-204 protein coding GM12878 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 197.00 0.10 0.51 83.12 WDR74-204 protein coding GM12878 (Cell line)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 7.00 0.00 0.02 87.5 WDR74-204 protein coding GM12878 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 914.00 0.49 2.36 71.97 WDR74-204 protein coding GM12878 (Cell line)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 1.00 0.00 0.00 12.5 WDR74-204 protein coding GM12878 (Cell line)