ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 69.00 22.62 0.18 100.0 SNORD121A-201 snoRNA GM12878 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 1967.00 37.87 5.07 66.18 SNORD126-201 snoRNA GM12878 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 1649.00 31.75 4.25 71.17 SNORD126-201 snoRNA GM12878 (Cell line)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 10067.00 88.40 25.96 92.46 SNORD124-201 snoRNA GM12878 (Cell line)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 7.00 0.20 0.02 100.0 SNHG12-201 retained intron GM12878 (Cell line)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 1266.00 13.47 3.26 100.0 RPL3-212 retained intron GM12878 (Cell line)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 4016.00 42.72 10.36 95.39 RPL3-212 retained intron GM12878 (Cell line)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 95661.00 97.33 246.70 100.0 SMC1A-204 retained intron GM12878 (Cell line)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 136686.00 86.79 352.49 99.73 RABGGTB-208 protein coding CDS not defined GM12878 (Cell line)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1957.00 45.86 5.05 100.0 DDX39B-219 retained intron GM12878 (Cell line)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 40.00 0.94 0.10 93.02 DDX39B-219 retained intron GM12878 (Cell line)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 534.00 12.51 1.38 100.0 DDX39B-219 retained intron GM12878 (Cell line)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 10548.00 67.86 27.20 100.0 RPS8-206 protein coding CDS not defined GM12878 (Cell line)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 335.00 5.28 0.86 100.0 RPL13-207 retained intron GM12878 (Cell line)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 4596.00 72.46 11.85 99.89 RPL13-207 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 1170132.00 61.91 3017.61 91.29 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 1238.00 0.07 3.19 100.0 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 658562.00 34.84 1698.34 96.68 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 829.00 0.04 2.14 100.0 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 3266.00 0.17 8.42 70.85 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 45.00 0.00 0.12 100.0 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 5092.00 0.27 13.13 89.41 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 3972.00 0.21 10.24 83.08 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1333.00 0.07 3.44 39.46 EIF4A2-219 retained intron GM12878 (Cell line)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 909.00 0.05 2.34 35.75 EIF4A2-219 retained intron GM12878 (Cell line)