ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 145.00 3.35 0.37 100.0 SNORD71-201 snoRNA GM12878 (Cell line)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 23720.00 72.52 61.17 87.16 MIR194-2HG-201 lncRNA GM12878 (Cell line)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 7119.00 21.77 18.36 65.23 MIR194-2HG-201 lncRNA GM12878 (Cell line)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 10989.00 13.44 28.34 100.0 LINC01783-201 lncRNA GM12878 (Cell line)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 10024.00 99.37 25.85 100.0 RPS7P15-201 processed pseudogene GM12878 (Cell line)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 17.00 0.13 0.04 100.0 SNORD62B-201 snoRNA GM12878 (Cell line)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 156.00 1.16 0.40 100.0 SNORD62B-201 snoRNA GM12878 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 509.00 3.79 1.31 100.0 SNORD62B-201 snoRNA GM12878 (Cell line)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 1838.00 13.67 4.74 100.0 SNORD62B-201 snoRNA GM12878 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 8472.00 63.03 21.85 95.82 SNORD62B-201 snoRNA GM12878 (Cell line)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 24106.00 97.02 62.17 100.0 MRPL32-203 nonsense mediated decay GM12878 (Cell line)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 1639.00 91.72 4.23 100.0 ENST00000436739 lncRNA GM12878 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 61.00 0.40 0.16 30.2 TMEM107-204 protein coding GM12878 (Cell line)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 801.00 5.26 2.07 39.09 TMEM107-204 protein coding GM12878 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 1076.00 7.07 2.77 100.0 TMEM107-204 protein coding GM12878 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 1439.00 9.46 3.71 100.0 TMEM107-204 protein coding GM12878 (Cell line)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 1.00 0.05 0.00 100.0 SNHG3-202 retained intron GM12878 (Cell line)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 492.00 23.81 1.27 100.0 SNHG16-201 lncRNA GM12878 (Cell line)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 336.00 16.26 0.87 65.37 SNHG16-201 lncRNA GM12878 (Cell line)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 49097.00 93.66 126.61 99.06 SNORD105B-201 snoRNA GM12878 (Cell line)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 4464.00 73.28 11.51 96.62 SNORD121B-201 snoRNA GM12878 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 84.00 5.30 0.22 100.0 SNORD127-201 snoRNA GM12878 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 1191.00 75.09 3.07 99.25 SNORD127-201 snoRNA GM12878 (Cell line)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 4123.00 44.39 10.63 100.0 SNORD42B-201 snoRNA GM12878 (Cell line)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 1782.00 2.14 4.60 100.0 RNY4P25-201 misc RNA GM12878 (Cell line)