ENCFF001REE
Library Details
| Organism: | Homo Sapiens |
|---|---|
| Biosample: | GM12878 (Cell line) |
| GEO DB ID: | Not available |
| ENCODE Experiment ID: | ENCSR000AEJ |
| Description: | Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study. |
|---|---|
| Author: | Thomas Gingeras, CSHL |
sncRNAs in this Library
| Precursor Transcript ID | sncRNA Name | sncRNA position in precursor | Expression | Expression Fraction | Expression (CPM) | Prominence | Transcript Name | Transcript Type | Biosample |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000387409.1 | ENST00000387409.1_1_37_+ | 1–37 | 139728.00 | 16.86 | 360.34 | 83.71 | MT-TY-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_50_+ | 1–50 | 215.00 | 0.03 | 0.55 | 100.0 | MT-TY-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_56_+ | 1–56 | 1091.00 | 0.13 | 2.81 | 100.0 | MT-TY-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_65_+ | 1–65 | 33770.00 | 4.07 | 87.09 | 100.0 | MT-TY-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_28_+ | 1–28 | 10028.00 | 1.21 | 25.86 | 100.0 | MT-TY-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_32_+ | 1–32 | 556009.00 | 67.08 | 1433.87 | 95.12 | MT-TY-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387419.1 | ENST00000387419.1_1_51_+ | 1–51 | 116.00 | 6.04 | 0.30 | 100.0 | MT-TD-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_58_+ | 1–58 | 1303.00 | 2.84 | 3.36 | 100.0 | MT-TK-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_31_+ | 1–31 | 198.00 | 0.43 | 0.51 | 100.0 | MT-TK-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_52_+ | 1–52 | 15338.00 | 33.44 | 39.55 | 100.0 | MT-TK-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_28_+ | 1–28 | 2831.00 | 6.17 | 7.30 | 100.0 | MT-TK-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387449.1 | ENST00000387449.1_1_53_+ | 1–53 | 641.00 | 1.04 | 1.65 | 100.0 | MT-TS2-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387449.1 | ENST00000387449.1_1_20_+ | 1–20 | 12471.00 | 20.25 | 32.16 | 72.83 | MT-TS2-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387449.1 | ENST00000387449.1_1_26_+ | 1–26 | 25317.00 | 41.11 | 65.29 | 100.0 | MT-TS2-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387456.1 | ENST00000387456.1_1_31_+ | 1–31 | 39300.00 | 64.28 | 101.35 | 100.0 | MT-TL2-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_13_67_+ | 13–67 | 652.00 | 0.61 | 1.68 | 100.0 | MT-TE-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_24_69_+ | 24–69 | 91.00 | 0.08 | 0.23 | 100.0 | MT-TE-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_1_69_+ | 1–69 | 81285.00 | 75.89 | 209.62 | 91.58 | MT-TE-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_1_57_+ | 1–57 | 83.00 | 0.08 | 0.21 | 100.0 | MT-TE-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_1_62_+ | 1–62 | 337.00 | 0.31 | 0.87 | 86.41 | MT-TE-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_40_67_+ | 40–67 | 2136.00 | 1.99 | 5.51 | 71.65 | MT-TE-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_39_69_+ | 39–69 | 845.00 | 0.79 | 2.18 | 45.45 | MT-TE-201 | Mt tRNA | GM12878 (Cell line) |
| ENST00000388006.1 | ENST00000388006.1_7_28_+ | 7–28 | 3.00 | 42.86 | 0.01 | 100.0 | MIR196A1-201 | miRNA | GM12878 (Cell line) |
| ENST00000389680.2 | ENST00000389680.2_316_354_+ | 316–354 | 4728.00 | 14.50 | 12.19 | 100.0 | MT-RNR1-201 | Mt rRNA | GM12878 (Cell line) |
| ENST00000390180.1 | ENST00000390180.1_64_86_+ | 64–86 | 5200.00 | 71.74 | 13.41 | 100.0 | MIR454-201 | miRNA | GM12878 (Cell line) |