ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 10348.00 26.89 26.69 100.0 MIR106B-201 miRNA GM12878 (Cell line)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 6922.00 17.99 17.85 39.82 MIR106B-201 miRNA GM12878 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 119248.00 87.66 307.52 99.34 SNORD83A-201 snoRNA GM12878 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 11042.00 8.12 28.48 89.85 SNORD83A-201 snoRNA GM12878 (Cell line)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 145.00 55.98 0.37 100.0 SNORD41-201 snoRNA GM12878 (Cell line)
ENST00000387314.1 ENST00000387314.1_41_56_+ 41–56 34380.00 25.89 88.66 60.82 MT-TF-201 Mt tRNA GM12878 (Cell line)
ENST00000387314.1 ENST00000387314.1_1_54_+ 1–54 202.00 0.15 0.52 100.0 MT-TF-201 Mt tRNA GM12878 (Cell line)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 3832.00 2.89 9.88 73.37 MT-TF-201 Mt tRNA GM12878 (Cell line)
ENST00000387342.1 ENST00000387342.1_1_53_+ 1–53 663.00 2.91 1.71 100.0 MT-TV-201 Mt tRNA GM12878 (Cell line)
ENST00000387347.2 ENST00000387347.2_1357_1376_+ 1357–1376 36669.00 16.94 94.56 100.0 MT-RNR2-201 Mt rRNA GM12878 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1528_+ 1500–1528 4620.00 2.13 11.91 90.29 MT-RNR2-201 Mt rRNA GM12878 (Cell line)
ENST00000387347.2 ENST00000387347.2_1132_1147_+ 1132–1147 37696.00 17.42 97.21 100.0 MT-RNR2-201 Mt rRNA GM12878 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1559_+ 1500–1559 22.00 0.01 0.06 100.0 MT-RNR2-201 Mt rRNA GM12878 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1531_+ 1500–1531 3334.00 1.54 8.60 90.35 MT-RNR2-201 Mt rRNA GM12878 (Cell line)
ENST00000387347.2 ENST00000387347.2_74_96_+ 74–96 20.00 0.01 0.05 100.0 MT-RNR2-201 Mt rRNA GM12878 (Cell line)
ENST00000387347.2 ENST00000387347.2_1297_1329_+ 1297–1329 9023.00 4.17 23.27 100.0 MT-RNR2-201 Mt rRNA GM12878 (Cell line)
ENST00000387365.1 ENST00000387365.1_1_58_+ 1–58 572.00 4.18 1.48 100.0 MT-TI-201 Mt tRNA GM12878 (Cell line)
ENST00000387365.1 ENST00000387365.1_1_51_+ 1–51 4719.00 34.50 12.17 95.22 MT-TI-201 Mt tRNA GM12878 (Cell line)
ENST00000387372.1 ENST00000387372.1_1_32_+ 1–32 3737.66 14.50 9.64 52.52 MT-TQ-201 Mt tRNA GM12878 (Cell line)
ENST00000387372.1 ENST00000387372.1_1_55_+ 1–55 1658.00 6.43 4.28 100.0 MT-TQ-201 Mt tRNA GM12878 (Cell line)
ENST00000387372.1 ENST00000387372.1_1_36_+ 1–36 3993.00 15.49 10.30 85.58 MT-TQ-201 Mt tRNA GM12878 (Cell line)
ENST00000387372.1 ENST00000387372.1_1_30_+ 1–30 3367.17 13.06 8.68 63.29 MT-TQ-201 Mt tRNA GM12878 (Cell line)
ENST00000387377.1 ENST00000387377.1_1_51_+ 1–51 1091.00 1.53 2.81 100.0 MT-TM-201 Mt tRNA GM12878 (Cell line)
ENST00000387377.1 ENST00000387377.1_1_31_+ 1–31 42564.00 59.65 109.77 97.91 MT-TM-201 Mt tRNA GM12878 (Cell line)
ENST00000387405.1 ENST00000387405.1_1_24_+ 1–24 3075.00 28.90 7.93 100.0 MT-TC-201 Mt tRNA GM12878 (Cell line)