ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385092.1 ENST00000385092.1_6_29_+ 6–29 370.00 17.88 0.95 99.46 MIR30A-201 miRNA GM12878 (Cell line)
ENST00000385092.1 ENST00000385092.1_47_68_+ 47–68 1613.00 77.96 4.16 100.0 MIR30A-201 miRNA GM12878 (Cell line)
ENST00000385092.1 ENST00000385092.1_6_21_+ 6–21 3.00 0.14 0.01 100.0 MIR30A-201 miRNA GM12878 (Cell line)
ENST00000385129.3 ENST00000385129.3_61_80_+ 61–80 604280.00 87.49 1558.36 89.06 MIR27B-201 miRNA GM12878 (Cell line)
ENST00000385129.3 ENST00000385129.3_19_40_+ 19–40 3342.00 0.48 8.62 100.0 MIR27B-201 miRNA GM12878 (Cell line)
ENST00000385189.3 ENST00000385189.3_25_47_+ 25–47 5.00 71.43 0.01 100.0 MIR196A2-201 miRNA GM12878 (Cell line)
ENST00000385196.1 ENST00000385196.1_15_36_+ 15–36 375.00 71.43 0.97 100.0 MIR577-201 miRNA GM12878 (Cell line)
ENST00000385199.1 ENST00000385199.1_51_70_+ 51–70 6.00 100.00 0.02 100.0 MIR654-201 miRNA GM12878 (Cell line)
ENST00000385200.3 ENST00000385200.3_33_54_+ 33–54 2.00 100.00 0.01 100.0 MIR204-201 miRNA GM12878 (Cell line)
ENST00000385212.3 ENST00000385212.3_54_76_+ 54–76 1906.00 78.18 4.92 100.0 MIR152-201 miRNA GM12878 (Cell line)
ENST00000385219.1 ENST00000385219.1_23_45_+ 23–45 2848.00 78.46 7.34 100.0 MIR138-1-201 miRNA GM12878 (Cell line)
ENST00000385227.1 ENST00000385227.1_17_40_+ 17–40 94701.00 93.49 244.22 100.0 MIR30C1-201 miRNA GM12878 (Cell line)
ENST00000385235.3 ENST00000385235.3_16_37_+ 16–37 2935.00 80.94 7.57 100.0 MIR660-201 miRNA GM12878 (Cell line)
ENST00000385236.1 ENST00000385236.1_15_37_+ 15–37 815.00 81.91 2.10 93.14 MIR125B1-201 miRNA GM12878 (Cell line)
ENST00000385236.1 ENST00000385236.1_55_76_+ 55–76 1.00 0.10 0.00 100.0 MIR125B1-201 miRNA GM12878 (Cell line)
ENST00000385254.3 ENST00000385254.3_57_78_+ 57–78 4.00 80.00 0.01 100.0 MIR493-201 miRNA GM12878 (Cell line)
ENST00000385255.3 ENST00000385255.3_23_44_+ 23–44 6073.69 16.06 15.66 21.54 MIR182-201 miRNA GM12878 (Cell line)
ENST00000385255.3 ENST00000385255.3_23_46_+ 23–46 24716.22 65.37 63.74 69.11 MIR182-201 miRNA GM12878 (Cell line)
ENST00000385259.1 ENST00000385259.1_13_34_+ 13–34 27.00 61.36 0.07 100.0 MIR100-201 miRNA GM12878 (Cell line)
ENST00000385261.1 ENST00000385261.1_51_73_+ 51–73 20388.00 89.35 52.58 100.0 MIR301A-201 miRNA GM12878 (Cell line)
ENST00000385274.1 ENST00000385274.1_55_74_+ 55–74 673.00 42.38 1.74 68.6 MIR130A-201 miRNA GM12878 (Cell line)
ENST00000385274.1 ENST00000385274.1_55_77_+ 55–77 900.00 56.68 2.32 71.6 MIR130A-201 miRNA GM12878 (Cell line)
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 355800.00 97.91 917.56 99.18 MIRLET7F2-201 miRNA GM12878 (Cell line)
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 562.00 40.81 1.45 100.0 MIR652-201 miRNA GM12878 (Cell line)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 21289.00 61.47 54.90 100.0 MIR140-201 miRNA GM12878 (Cell line)