ENCFF000KHC

Library Details

Organism: Homo Sapiens
Biosample: SK-N-SH (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CSJ
Description: Part of ENCODE experiment ENCSR000CSJ. The libraries contained in this experiment come from whole cell extracts from independent growths of cell line, SK-N-SH. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 160.00 29.20 53.69 100.0 C19orf48P-203 retained intron SK-N-SH (Cell line)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 2120.00 72.48 711.46 100.0 NOP56-219 retained intron SK-N-SH (Cell line)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 9.00 0.51 3.02 32.14 U2.3-201 snRNA SK-N-SH (Cell line)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 48.00 2.70 16.11 100.0 U2.3-201 snRNA SK-N-SH (Cell line)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 90.00 5.07 30.20 50.56 U2.3-201 snRNA SK-N-SH (Cell line)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 8.01 0.45 2.69 80.1 U2.3-201 snRNA SK-N-SH (Cell line)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 120.82 6.81 40.55 78.46 U2.3-201 snRNA SK-N-SH (Cell line)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 37.26 2.10 12.50 40.5 U2.3-201 snRNA SK-N-SH (Cell line)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 9.00 0.20 3.02 100.0 GAS5-230 retained intron SK-N-SH (Cell line)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 1038.00 22.81 348.34 93.77 GAS5-230 retained intron SK-N-SH (Cell line)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 18.00 0.40 6.04 100.0 GAS5-230 retained intron SK-N-SH (Cell line)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 1748.00 38.42 586.62 79.13 GAS5-230 retained intron SK-N-SH (Cell line)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 3728.00 77.44 1251.09 100.0 ENST00000651540 lncRNA SK-N-SH (Cell line)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 1743.00 14.48 584.94 99.94 SNHG29-232 lncRNA SK-N-SH (Cell line)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 8644.00 71.80 2900.86 88.31 SNHG29-232 lncRNA SK-N-SH (Cell line)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 1.00 0.01 0.34 100.0 SNHG29-232 lncRNA SK-N-SH (Cell line)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 38.00 0.32 12.75 100.0 SNHG29-232 lncRNA SK-N-SH (Cell line)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 527.00 30.05 176.86 100.0 SNHG1-248 lncRNA SK-N-SH (Cell line)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 533.00 30.39 178.87 100.0 SNHG1-248 lncRNA SK-N-SH (Cell line)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 334.00 19.04 112.09 100.0 SNHG1-248 lncRNA SK-N-SH (Cell line)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 2374.00 9.52 796.70 100.0 SNHG5-273 lncRNA SK-N-SH (Cell line)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 9903.00 39.72 3323.37 88.16 SNHG5-273 lncRNA SK-N-SH (Cell line)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 8340.00 33.45 2798.84 89.32 SNHG5-273 lncRNA SK-N-SH (Cell line)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 39.00 97.50 13.09 100.0 SNHG14-336 lncRNA SK-N-SH (Cell line)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 231.00 81.91 77.52 100.0 NCL-216 retained intron SK-N-SH (Cell line)